Variant report

Variant	rs74134301
Chromosome Location	chr1:186017371-186017372
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs6695626	1.00[ASN][1000 genomes]
rs74134288	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74134302	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs74136048	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3424090	chr1:185679718-186270877	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:185939200-186023000	Weak transcription	Adipose Nuclei	Adipose
2	chr1:185985400-186023800	Weak transcription	Left Ventricle	heart
3	chr1:185993200-186023000	Weak transcription	Liver	Liver
4	chr1:186001400-186019200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr1:186007400-186048000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr1:186008200-186017400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr1:186009400-186078000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:186012000-186048200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr1:186013000-186018400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr1:186013000-186026600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr1:186013600-186068400	Weak transcription	Fetal Kidney	kidney
12	chr1:186015400-186019400	Weak transcription	NH-A	brain
13	chr1:186015800-186017400	Enhancers	Hela-S3	cervix
14	chr1:186016200-186041800	Weak transcription	Aorta	Aorta
15	chr1:186016400-186023000	Weak transcription	Fetal Lung	lung
16	chr1:186016400-186038600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr1:186016800-186019400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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