Variant report

Variant	rs74134348
Chromosome Location	chr1:196507407-196507408
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12121378	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12134831	0.92[AFR][1000 genomes]
rs74134372	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931415	chr1:196270759-196744780	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	nsv1009233	chr1:196301712-196568874	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:196503600-196509600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr1:196503800-196509800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
3	chr1:196504200-196508000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
4	chr1:196504200-196508000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chr1:196504200-196508000	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
6	chr1:196504800-196507800	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr1:196504800-196508000	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr1:196505000-196507800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:196505800-196507800	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr1:196506800-196507600	Weak transcription	Fetal Lung	lung
11	chr1:196506800-196509200	Weak transcription	Liver	Liver
12	chr1:196507000-196508600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
13	chr1:196507400-196508000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links