Variant report

Variant	rs74134864
Chromosome Location	chr1:197694908-197694909
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:197688429..197690737-chr1:197693121..197696010,2	MCF-7	breast:
2	chr1:197694509..197697349-chr1:197703943..197706021,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000213047	Chromatin interaction
ENSG00000235582	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs16841925	0.82[AFR][1000 genomes]
rs56010669	0.82[AFR][1000 genomes]
rs74134871	0.82[AFR][1000 genomes]
rs74134872	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873074	chr1:197464448-197698103	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv873075	chr1:197464448-197714851	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv437263	chr1:197599030-197722240	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv427908	chr1:197611569-197767362	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv873077	chr1:197615391-197698103	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:197688000-197707400	Weak transcription	Left Ventricle	heart
2	chr1:197691000-197695200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr1:197691000-197697200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr1:197692800-197702600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:197693000-197696000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr1:197693200-197695400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:197693600-197696000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr1:197693800-197701600	Weak transcription	Fetal Thymus	thymus
9	chr1:197694200-197695200	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
10	chr1:197694200-197695600	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:197694200-197695800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
12	chr1:197694200-197695800	ZNF genes & repeats	Liver	Liver
13	chr1:197694200-197695800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
14	chr1:197694400-197695800	ZNF genes & repeats	Fetal Lung	lung
15	chr1:197694400-197705600	Weak transcription	Osteobl	bone
16	chr1:197694600-197696000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
17	chr1:197694800-197695400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr1:197694800-197695800	ZNF genes & repeats	Primary B cells from cord blood	blood
19	chr1:197694800-197695800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
20	chr1:197694800-197695800	ZNF genes & repeats	NHDF-Ad	bronchial
21	chr1:197694800-197698000	ZNF genes & repeats	Dnd41	blood
22	chr1:197694800-197707400	Weak transcription	Psoas Muscle	Psoas

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