Variant report

Variant	rs74135712
Chromosome Location	chr10:43804022-43804023
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43803844..43805693-chr10:43875587..43878080,2	K562	blood:
2	chr10:43720964..43723652-chr10:43803043..43805548,2	K562	blood:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs57169447	1.00[AMR][1000 genomes]
rs58340819	1.00[AMR][1000 genomes]
rs58594005	1.00[AMR][1000 genomes]
rs58609636	1.00[AMR][1000 genomes]
rs74135709	1.00[AMR][1000 genomes]
rs74135713	1.00[AMR][1000 genomes]
rs74135718	1.00[AMR][1000 genomes]
rs74135728	1.00[AMR][1000 genomes]
rs74135737	1.00[AMR][1000 genomes]
rs7915588	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv895085	chr10:43695049-43804617	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
7	nsv466882	chr10:43721481-43849358	Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv550697	chr10:43721481-43849358	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
9	nsv1044422	chr10:43731521-43860307	Bivalent/Poised TSS Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43800800-43804800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr10:43801000-43804200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr10:43801000-43804400	Weak transcription	Primary T helper cells PMA-I stimulated	--
4	chr10:43801000-43804400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr10:43801800-43804400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr10:43801800-43804600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr10:43803600-43805200	Enhancers	Brain Cingulate Gyrus	brain
8	chr10:43803600-43806000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr10:43803800-43804400	Enhancers	Brain Inferior Temporal Lobe	brain
10	chr10:43803800-43804600	Enhancers	Brain Angular Gyrus	brain
11	chr10:43803800-43805200	Enhancers	Brain Anterior Caudate	brain
12	chr10:43803800-43805200	Enhancers	Brain Hippocampus Middle	brain
13	chr10:43803800-43805200	Enhancers	Brain Substantia Nigra	brain
14	chr10:43803800-43805200	Enhancers	A549	lung
15	chr10:43804000-43804200	Enhancers	Right Atrium	heart
16	chr10:43804000-43804600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:43804000-43804800	Enhancers	Liver	Liver
18	chr10:43804000-43804800	Enhancers	Esophagus	oesophagus
19	chr10:43804000-43804800	Weak transcription	Ovary	ovary
20	chr10:43804000-43805000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:43804000-43805200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:43804000-43805200	Enhancers	Duodenum Mucosa	Duodenum
23	chr10:43804000-43805600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr10:43804000-43806000	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr10:43804000-43806200	Enhancers	Primary T cells fromperipheralblood	blood
26	chr10:43804000-43806200	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr10:43804000-43806800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr10:43804000-43806800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links