Variant report

Variant	rs74138255
Chromosome Location	chr10:44692031-44692032
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs74138237	0.91[AFR][1000 genomes]
rs74138251	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74138265	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038511	chr10:44596885-44870030	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44688000-44700600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:44689200-44700600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:44690600-44692200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:44691000-44694200	Weak transcription	Placenta	Placenta
5	chr10:44691400-44693400	Weak transcription	Fetal Stomach	stomach
6	chr10:44691400-44701200	Weak transcription	Fetal Heart	heart
7	chr10:44691600-44694800	Weak transcription	Right Ventricle	heart
8	chr10:44691600-44705200	Weak transcription	Right Atrium	heart
9	chr10:44691800-44692600	Enhancers	HepG2	liver
10	chr10:44691800-44693200	Weak transcription	Adipose Nuclei	Adipose
11	chr10:44691800-44693200	Weak transcription	HSMM	muscle
12	chr10:44691800-44693600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:44691800-44693600	Weak transcription	HSMMtube	muscle
14	chr10:44691800-44693800	Weak transcription	NHLF	lung
15	chr10:44691800-44694400	Weak transcription	Left Ventricle	heart
16	chr10:44692000-44693000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr10:44692000-44693000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr10:44692000-44693000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr10:44692000-44693000	Weak transcription	Ovary	ovary
20	chr10:44692000-44693000	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr10:44692000-44693400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr10:44692000-44693400	Weak transcription	NHDF-Ad	bronchial
23	chr10:44692000-44693800	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:44692000-44694400	Weak transcription	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links