Variant report

Variant	rs74138972
Chromosome Location	chr10:44466005-44466006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs74138964	1.00[EUR][1000 genomes]
rs74138971	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs74138974	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3411198	chr10:44465826-44466179	Weak transcription Enhancers Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44460200-44466800	Weak transcription	Spleen	Spleen
2	chr10:44461800-44469000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr10:44462000-44474400	Weak transcription	Left Ventricle	heart
4	chr10:44462400-44475200	Weak transcription	Right Atrium	heart
5	chr10:44463600-44467200	Weak transcription	Ovary	ovary
6	chr10:44464600-44467200	Enhancers	Fetal Muscle Leg	muscle
7	chr10:44465000-44466400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr10:44465400-44466200	Enhancers	Fetal Heart	heart
9	chr10:44465600-44466400	Enhancers	Brain Substantia Nigra	brain
10	chr10:44466000-44466400	Enhancers	Brain Cingulate Gyrus	brain
11	chr10:44466000-44466400	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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