Variant report

Variant	rs74138987
Chromosome Location	chr10:44511622-44511623
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57992999	1.00[AMR][1000 genomes]
rs74138229	1.00[AMR][1000 genomes]
rs74138232	1.00[AMR][1000 genomes]
rs74138237	1.00[AMR][1000 genomes]
rs74140606	1.00[AMR][1000 genomes]
rs74140629	1.00[AMR][1000 genomes]
rs74140630	1.00[AMR][1000 genomes]
rs74140632	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466884	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv550698	chr10:44473036-44515130	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:44504000-44513000	Weak transcription	Lung	lung
2	chr10:44505600-44512000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr10:44506600-44513000	Weak transcription	Gastric	stomach
4	chr10:44506800-44512200	Weak transcription	Osteobl	bone
5	chr10:44507400-44511800	Weak transcription	Left Ventricle	heart
6	chr10:44507600-44512600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr10:44507600-44513200	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr10:44507800-44513400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr10:44508400-44512800	Weak transcription	Spleen	Spleen
10	chr10:44508600-44512800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:44510400-44511800	Weak transcription	Placenta	Placenta
12	chr10:44510400-44512600	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr10:44510400-44513600	Enhancers	Ovary	ovary
14	chr10:44510600-44513200	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr10:44510600-44513400	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr10:44510600-44513800	Enhancers	Adipose Nuclei	Adipose
17	chr10:44510800-44511800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr10:44511200-44511800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:44511200-44511800	Enhancers	Pancreas	Pancrea
20	chr10:44511200-44512400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr10:44511200-44513200	Enhancers	Liver	Liver
22	chr10:44511200-44513200	Enhancers	Fetal Muscle Leg	muscle
23	chr10:44511200-44513200	Enhancers	GM12878-XiMat	blood
24	chr10:44511400-44512400	Enhancers	Colonic Mucosa	Colon
25	chr10:44511400-44513400	Enhancers	Stomach Smooth Muscle	stomach
26	chr10:44511400-44513600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr10:44511400-44513600	Enhancers	Right Atrium	heart
28	chr10:44511600-44511800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr10:44511600-44512400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr10:44511600-44512400	Enhancers	Fetal Muscle Trunk	muscle
31	chr10:44511600-44513400	Enhancers	Colon Smooth Muscle	Colon
32	chr10:44511600-44513400	Enhancers	Right Ventricle	heart

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