Variant report

Variant	rs74140521
Chromosome Location	chr1:213091894-213091895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17740000	0.87[EUR][1000 genomes]
rs55879002	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008383	chr1:213025546-213114894	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:213086800-213094400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:213090600-213092800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
3	chr1:213090600-213093200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr1:213090600-213101800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:213090800-213092000	Weak transcription	GM12878-XiMat	blood
6	chr1:213090800-213092600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:213090800-213101200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr1:213090800-213101200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr1:213090800-213101200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr1:213091200-213092200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr1:213091200-213095000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr1:213091400-213092600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr1:213091800-213092000	Active TSS	ES-I3 Cell Line	embryonic stem cell
14	chr1:213091800-213092200	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr1:213091800-213100400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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