Variant report

Variant	rs74141651
Chromosome Location	chr1:216951451-216951452
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs57380375	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59729655	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141649	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141653	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74141656	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762162	chr1:216942781-216966140	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv947380	chr1:216946923-216954429	Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:216897400-216958600	Weak transcription	Pancreas	Pancrea
2	chr1:216939800-216958600	Weak transcription	Psoas Muscle	Psoas
3	chr1:216944000-216951600	Weak transcription	Aorta	Aorta
4	chr1:216950400-216953000	Weak transcription	Fetal Heart	heart
5	chr1:216950800-216953000	Weak transcription	Fetal Lung	lung
6	chr1:216951400-216952000	ZNF genes & repeats	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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