Variant report

Variant	rs74146212
Chromosome Location	chr10:89560378-89560379
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:89560023..89562647-chr10:89574852..89577669,2	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11202567	0.83[AFR][1000 genomes]
rs11202569	0.97[AFR][1000 genomes]
rs12267237	1.00[AFR][1000 genomes]
rs41299161	0.83[EUR][1000 genomes]
rs74146213	0.83[AFR][1000 genomes]
rs74146214	0.83[AFR][1000 genomes]
rs74146226	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518233	chr10:89512839-89584002	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1041462	chr10:89518729-89584284	Strong transcription Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:89473000-89577200	Weak transcription	Gastric	stomach
2	chr10:89495000-89576400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:89495200-89577400	Weak transcription	Spleen	Spleen
4	chr10:89511000-89576800	Weak transcription	Colonic Mucosa	Colon
5	chr10:89512800-89560400	Weak transcription	Fetal Brain Male	brain
6	chr10:89513400-89577000	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:89520600-89575600	Weak transcription	Stomach Mucosa	stomach
8	chr10:89523400-89562800	Weak transcription	K562	blood
9	chr10:89523800-89562000	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr10:89524600-89560400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr10:89527400-89575000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr10:89530800-89575800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:89536200-89574600	Weak transcription	Brain Anterior Caudate	brain
14	chr10:89537000-89560400	Weak transcription	Small Intestine	intestine
15	chr10:89537000-89576400	Weak transcription	HSMMtube	muscle
16	chr10:89540200-89562800	Weak transcription	Fetal Heart	heart
17	chr10:89540800-89563000	Weak transcription	Ovary	ovary
18	chr10:89541800-89575000	Weak transcription	Right Ventricle	heart
19	chr10:89542000-89571200	Weak transcription	Brain Hippocampus Middle	brain
20	chr10:89543000-89562000	Weak transcription	Thymus	Thymus
21	chr10:89543000-89571400	Weak transcription	Rectal Smooth Muscle	rectum
22	chr10:89543200-89563200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr10:89543200-89572200	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr10:89543400-89577200	Weak transcription	Aorta	Aorta
25	chr10:89547000-89563800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr10:89548200-89574800	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr10:89549400-89575400	Weak transcription	Brain Angular Gyrus	brain
28	chr10:89549800-89561800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr10:89550000-89572200	Weak transcription	HUVEC	blood vessel
30	chr10:89552400-89560600	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr10:89552400-89562000	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr10:89552600-89566200	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr10:89552800-89562000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr10:89552800-89571400	Weak transcription	NHEK	skin
35	chr10:89553000-89560400	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr10:89553000-89570000	Weak transcription	HMEC	breast
37	chr10:89553200-89565800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr10:89553200-89569800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr10:89554400-89570800	Weak transcription	Esophagus	oesophagus
40	chr10:89554400-89577200	Weak transcription	Pancreas	Pancrea
41	chr10:89554600-89562000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
42	chr10:89555000-89560600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr10:89555400-89564600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
44	chr10:89556200-89573800	Strong transcription	HSMM	muscle
45	chr10:89556400-89565800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr10:89556600-89569200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr10:89557000-89562000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:89557000-89575000	Weak transcription	Adipose Nuclei	Adipose
49	chr10:89557000-89575800	Weak transcription	NH-A	brain
50	chr10:89557400-89563400	Weak transcription	Brain Germinal Matrix	brain

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