Variant report

Variant	rs74147636
Chromosome Location	chr1:225898480-225898481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:225838410..225840980-chr1:225898015..225900271,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SRP9-1	chr1:225898205-225898540	XLOC_000587

Variant related genes	Relation type
ENSG00000154380	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs16845217	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2085946	0.84[AFR][1000 genomes]
rs56309271	0.85[AMR][1000 genomes]
rs58832958	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6685617	1.00[AMR][1000 genomes]
rs6694179	1.00[AMR][1000 genomes]
rs74148658	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74148660	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832725	chr1:225726998-225910121	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832736	chr1:225815717-225968619	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	esv1795046	chr1:225874059-226091150	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	esv1834932	chr1:225874059-226091150	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
5	esv1834948	chr1:225874059-226214882	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	60 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:225875200-225898600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:225882400-225908000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr1:225888400-225899000	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:225889400-225909200	Weak transcription	Aorta	Aorta
5	chr1:225893400-225902400	Weak transcription	Gastric	stomach
6	chr1:225893600-225898600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr1:225894000-225900400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr1:225894200-225899200	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr1:225895000-225898600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr1:225896000-225898600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:225896000-225899400	Enhancers	HMEC	breast
12	chr1:225896200-225898600	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr1:225896400-225899200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:225896400-225899400	Enhancers	NHEK	skin
15	chr1:225896600-225898600	Enhancers	HepG2	liver
16	chr1:225896600-225899200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:225896800-225899400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr1:225897000-225902600	Weak transcription	Pancreas	Pancrea
19	chr1:225897600-225898600	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr1:225897600-225900000	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr1:225897800-225901200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr1:225898000-225899000	Enhancers	Fetal Muscle Leg	muscle
23	chr1:225898200-225898600	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr1:225898200-225898800	Enhancers	Fetal Lung	lung
25	chr1:225898200-225899000	Enhancers	NH-A	brain
26	chr1:225898200-225899400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr1:225898200-225899600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr1:225898400-225898800	Enhancers	NHDF-Ad	bronchial
29	chr1:225898400-225899200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr1:225898400-225899200	Flanking Active TSS	A549	lung
31	chr1:225898400-225899200	Enhancers	Osteobl	bone
32	chr1:225898400-225899400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr1:225898400-225899400	Enhancers	HUES48 Cell Line	embryonic stem cell
34	chr1:225898400-225899400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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