Variant report

Variant	rs74148315
Chromosome Location	chr1:222073831-222073832
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs56262694	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56706258	1.00[AMR][1000 genomes]
rs57445858	1.00[AMR][1000 genomes]
rs58630400	1.00[AMR][1000 genomes]
rs74145015	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74145017	1.00[AMR][1000 genomes]
rs74145018	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74145026	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74145033	1.00[AMR][1000 genomes]
rs74145034	1.00[AMR][1000 genomes]
rs74145036	1.00[AMR][1000 genomes]
rs74145037	1.00[AMR][1000 genomes]
rs74148321	1.00[AMR][1000 genomes]
rs74148322	1.00[AMR][1000 genomes]
rs74148324	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74148325	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002463	chr1:221863355-222095773	Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535302	chr1:221863355-222095773	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:222071200-222085400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:222073600-222074000	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr1:222073600-222074400	Enhancers	GM12878-XiMat	blood
4	chr1:222073600-222074400	Enhancers	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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