Variant report

Variant	rs74149059
Chromosome Location	chr1:239595789-239595790
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:239595515..239596274-chr19:36392405..36393038,2	MCF-7	breast:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs55684684	0.84[AFR][1000 genomes]
rs55724527	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55748704	0.84[AFR][1000 genomes]
rs55978726	1.00[AMR][1000 genomes]
rs56000946	1.00[AMR][1000 genomes]
rs56096119	0.84[AFR][1000 genomes]
rs56293463	1.00[AMR][1000 genomes]
rs57533762	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59878502	0.84[AFR][1000 genomes]
rs60564612	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60707729	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60797302	0.84[AFR][1000 genomes]
rs61472058	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149050	1.00[AMR][1000 genomes]
rs74149051	1.00[AMR][1000 genomes]
rs74149052	1.00[AMR][1000 genomes]
rs74149053	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149054	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74149073	0.84[AFR][1000 genomes]
rs74149077	0.84[AFR][1000 genomes]
rs74149078	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002301	chr1:239182255-239774393	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1006640	chr1:239290853-239658788	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv535358	chr1:239290853-239658788	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv549435	chr1:239375010-239974006	Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv3373454	chr1:239495349-239670615	Bivalent Enhancer Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv873350	chr1:239498915-239648140	Enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv833037	chr1:239522168-239699412	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	esv3584614	chr1:239590223-239601163	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:239595400-239599400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr1:239595400-239614200	Weak transcription	Pancreas	Pancrea
3	chr1:239595600-239595800	Enhancers	Colon Smooth Muscle	Colon

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