Variant report

Variant	rs74149111
Chromosome Location	chr10:94456334-94456335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94455458..94457968-chr10:94458625..94460988,4	K562	blood:
2	chr10:94453220..94457125-chr10:94606505..94610543,6	K562	blood:
3	chr10:94454513..94457218-chr10:94513369..94516034,3	K562	blood:
4	chr10:94454328..94456440-chr10:94518321..94520256,2	K562	blood:
5	chr10:94455184..94459266-chr10:94589276..94593121,4	K562	blood:
6	chr10:94454886..94456957-chr10:94516147..94518096,2	K562	blood:
7	chr10:94456016..94458040-chr10:94597968..94600497,2	K562	blood:
8	chr10:94454328..94456440-chr10:94516078..94520256,4	K562	blood:
9	chr10:94454402..94458204-chr10:94589019..94595700,6	K562	blood:

No data

Variant related genes	Relation type
ENSG00000138190	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs55927887	1.00[AFR][1000 genomes]
rs74149106	1.00[AFR][1000 genomes]
rs74149107	1.00[AFR][1000 genomes]
rs74149115	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv3446249	chr10:94374508-94549394	Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	esv1794949	chr10:94392728-94465559	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv825517	chr10:94397149-94472509	Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv825518	chr10:94403446-94467700	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv895896	chr10:94429526-94460650	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv895897	chr10:94430068-94460650	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94450800-94459000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr10:94451800-94457600	Weak transcription	Dnd41	blood
3	chr10:94453200-94456400	Genic enhancers	Primary hematopoietic stem cells	blood
4	chr10:94453600-94456400	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:94454200-94456400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr10:94454600-94456600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr10:94455000-94456400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
8	chr10:94455400-94456400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
9	chr10:94455400-94456400	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:94455400-94456400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
11	chr10:94455400-94456400	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr10:94455400-94456400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:94455400-94456400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr10:94455400-94456400	Bivalent Enhancer	Fetal Intestine Small	intestine
15	chr10:94455400-94456400	Active TSS	Osteobl	bone
16	chr10:94455400-94456600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:94455400-94457000	Enhancers	Placenta	Placenta
18	chr10:94455800-94456400	Active TSS	Stomach Smooth Muscle	stomach
19	chr10:94455800-94458400	Enhancers	HUVEC	blood vessel
20	chr10:94455800-94459200	Weak transcription	Lung	lung
21	chr10:94456000-94456400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr10:94456000-94456400	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr10:94456000-94456400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr10:94456000-94456400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr10:94456000-94456400	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
26	chr10:94456000-94456400	Genic enhancers	Right Atrium	heart
27	chr10:94456000-94456400	Enhancers	Right Ventricle	heart
28	chr10:94456000-94456400	Bivalent Enhancer	NHDF-Ad	bronchial
29	chr10:94456000-94457200	Flanking Active TSS	Liver	Liver
30	chr10:94456000-94457400	Flanking Active TSS	A549	lung
31	chr10:94456000-94457400	Flanking Active TSS	HepG2	liver
32	chr10:94456000-94458200	Flanking Active TSS	K562	blood
33	chr10:94456000-94459000	Enhancers	Primary B cells from cord blood	blood
34	chr10:94456200-94456400	Flanking Bivalent TSS/Enh	ES-I3 Cell Line	embryonic stem cell
35	chr10:94456200-94456400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr10:94456200-94456400	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
37	chr10:94456200-94456400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
38	chr10:94456200-94456400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
39	chr10:94456200-94456400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
40	chr10:94456200-94456400	Weak transcription	Primary B cells from peripheral blood	blood
41	chr10:94456200-94456400	Enhancers	Muscle Satellite Cultured Cells	--
42	chr10:94456200-94456400	Genic enhancers	Spleen	Spleen
43	chr10:94456200-94456400	Enhancers	NH-A	brain
44	chr10:94456200-94456400	Enhancers	NHLF	lung
45	chr10:94456200-94456800	Weak transcription	Monocytes-CD14+_RO01746	blood
46	chr10:94456200-94457000	Enhancers	Pancreas	Pancrea
47	chr10:94456200-94457400	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr10:94456200-94459000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr10:94456200-94459000	Weak transcription	Primary neutrophils fromperipheralblood	blood
50	chr10:94456200-94459000	Enhancers	Primary hematopoietic stem cells short term culture	blood

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