Variant report

Variant	rs74150839
Chromosome Location	chr10:96355386-96355387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:96313161..96315470-chr10:96353062..96355863,2	K562	blood:

Variant related genes	Relation type
ENSG00000119969	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs55649418	1.00[AMR][1000 genomes]
rs55679552	1.00[AMR][1000 genomes]
rs58413456	1.00[AMR][1000 genomes]
rs59825752	1.00[AMR][1000 genomes]
rs60421813	1.00[AMR][1000 genomes]
rs60886786	1.00[AMR][1000 genomes]
rs61556817	1.00[AMR][1000 genomes]
rs74150832	1.00[AMR][1000 genomes]
rs74152331	1.00[AMR][1000 genomes]
rs74152349	1.00[AMR][1000 genomes]
rs7907261	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv497859	chr10:96058024-97027747	Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	esv1819509	chr10:96064300-96361776	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
3	nsv1053747	chr10:96211618-96366396	Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
4	nsv517681	chr10:96343228-96387079	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv975786	chr10:96352319-96359053	Weak transcription Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:96306400-96357200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:96306400-96365600	Weak transcription	Esophagus	oesophagus
3	chr10:96306400-96370400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr10:96306400-96370600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:96306400-96371000	Weak transcription	Ovary	ovary
6	chr10:96306600-96379200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr10:96306800-96357200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr10:96306800-96373000	Weak transcription	Primary T cells from cord blood	blood
9	chr10:96307000-96358200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr10:96307000-96375000	Weak transcription	Osteobl	bone
11	chr10:96307200-96371200	Weak transcription	Fetal Brain Male	brain
12	chr10:96307600-96356000	Weak transcription	NHDF-Ad	bronchial
13	chr10:96307600-96373200	Weak transcription	Brain Germinal Matrix	brain
14	chr10:96307800-96373000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:96308000-96373200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:96309600-96372800	Strong transcription	HUES6 Cell Line	embryonic stem cell
17	chr10:96309600-96377000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr10:96312800-96372200	Strong transcription	Dnd41	blood
19	chr10:96314200-96373400	Strong transcription	HUES64 Cell Line	embryonic stem cell
20	chr10:96315000-96369200	Weak transcription	Fetal Kidney	kidney
21	chr10:96316000-96371400	Weak transcription	Fetal Brain Female	brain
22	chr10:96316000-96374000	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr10:96316200-96357600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr10:96316200-96373000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
25	chr10:96317000-96372600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
26	chr10:96324000-96356600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr10:96324000-96376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr10:96324200-96365600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr10:96325800-96376000	Weak transcription	NHLF	lung
30	chr10:96331000-96377400	Weak transcription	Placenta	Placenta
31	chr10:96331200-96361800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr10:96332400-96359200	Weak transcription	Left Ventricle	heart
33	chr10:96335400-96357200	Weak transcription	Small Intestine	intestine
34	chr10:96338800-96372000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr10:96345400-96360000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr10:96345400-96360400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:96345400-96371200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
38	chr10:96345600-96372400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr10:96346400-96360000	Strong transcription	Fetal Thymus	thymus
40	chr10:96346600-96360800	Weak transcription	Primary T helper cells PMA-I stimulated	--
41	chr10:96346600-96372600	Strong transcription	H1 Cell Line	embryonic stem cell
42	chr10:96346800-96358800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:96346800-96359400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:96347200-96368000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr10:96347800-96362000	Strong transcription	Hela-S3	cervix
46	chr10:96348000-96355400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr10:96348000-96358200	Strong transcription	HSMM	muscle
48	chr10:96348000-96359200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
49	chr10:96348000-96369600	Weak transcription	Fetal Heart	heart
50	chr10:96348200-96364800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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