Variant report

Variant	rs74151656
Chromosome Location	chr10:94332429-94332430
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:94301008..94306280-chr10:94330329..94333980,6	MCF-7	breast:
2	chr10:94327650..94337583-chr10:94349444..94356782,22	K562	blood:
3	chr10:94300885..94308768-chr10:94330971..94336052,7	K562	blood:
4	chr10:94330286..94336827-chr10:94349891..94354260,15	K562	blood:
5	chr10:94332371..94335153-chr10:94446165..94448467,2	K562	blood:
6	chr10:94332262..94336114-chr10:94349834..94354042,11	MCF-7	breast:
7	chr10:94302530..94304452-chr10:94331957..94333694,2	MCF-7	breast:
8	chr10:94330457..94332438-chr10:94448558..94451661,3	K562	blood:
9	chr10:94332407..94336018-chr10:94349212..94353201,7	MCF-7	breast:
10	chr10:94331646..94333667-chr10:94512127..94514610,2	K562	blood:
11	chr10:94331851..94333492-chr10:94336755..94339321,2	K562	blood:
12	chr10:94331601..94334574-chr10:94607928..94609540,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000138160	Chromatin interaction
ENSG00000138190	Chromatin interaction
ENSG00000119912	Chromatin interaction
ENSG00000152804	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11187066	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12253177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12258487	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12262994	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264361	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12264682	0.88[AFR][1000 genomes]
rs12266443	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875329	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875332	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875344	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875345	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875346	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17875347	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2275218	0.81[ASN][1000 genomes]
rs2275220	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2421942	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3737225	0.81[ASN][1000 genomes]
rs57299222	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs74151643	0.88[AFR][1000 genomes]
rs74151654	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151657	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151659	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151667	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74151672	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046258	chr10:93866969-94466106	Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	esv1792868	chr10:94232247-94409749	Strong transcription Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv895894	chr10:94249982-94452430	Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
4	nsv895895	chr10:94304132-94372706	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94320800-94332600	Weak transcription	Fetal Stomach	stomach
2	chr10:94331200-94332600	Enhancers	Fetal Lung	lung
3	chr10:94331200-94332800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:94331200-94332800	Flanking Active TSS	Hela-S3	cervix
5	chr10:94331200-94332800	Flanking Active TSS	Osteobl	bone
6	chr10:94331400-94332600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr10:94331400-94332600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:94331400-94333000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr10:94331400-94333200	Flanking Active TSS	HUVEC	blood vessel
10	chr10:94331400-94334600	Active TSS	A549	lung
11	chr10:94331600-94332600	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr10:94331600-94332600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
13	chr10:94331600-94332600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:94331600-94332600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr10:94331600-94332600	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr10:94331600-94332800	Enhancers	Primary B cells from peripheral blood	blood
17	chr10:94331600-94332800	Flanking Active TSS	NHEK	skin
18	chr10:94331800-94332600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr10:94331800-94332600	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr10:94331800-94332600	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr10:94331800-94332800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr10:94331800-94333000	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr10:94331800-94333000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
24	chr10:94331800-94333200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
25	chr10:94331800-94333200	Flanking Active TSS	Dnd41	blood
26	chr10:94332000-94332600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
27	chr10:94332000-94332600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr10:94332000-94332600	Enhancers	Fetal Muscle Leg	muscle
29	chr10:94332000-94332800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr10:94332000-94332800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:94332000-94332800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr10:94332000-94332800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:94332000-94332800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
34	chr10:94332000-94332800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:94332000-94332800	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr10:94332000-94332800	Flanking Active TSS	Right Atrium	heart
37	chr10:94332000-94332800	Flanking Active TSS	Right Ventricle	heart
38	chr10:94332000-94333000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr10:94332000-94333000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
40	chr10:94332000-94333000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:94332000-94333000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
42	chr10:94332000-94333000	Flanking Active TSS	Stomach Smooth Muscle	stomach
43	chr10:94332000-94333200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
44	chr10:94332000-94333200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:94332000-94333200	Flanking Active TSS	NH-A	brain
46	chr10:94332000-94333400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
47	chr10:94332000-94333400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr10:94332000-94333400	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr10:94332000-94334800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:94332200-94332600	Flanking Active TSS	H1 Cell Line	embryonic stem cell

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