Variant report

Variant	rs74152011
Chromosome Location	chr10:99477913-99477914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:99477505..99481349-chr10:99484055..99486700,3	MCF-7	breast:
2	chr10:99443080..99453237-chr10:99471420..99478243,12	MCF-7	breast:
3	chr10:99444102..99447131-chr10:99475724..99478855,3	MCF-7	breast:
4	chr10:99477514..99480441-chr10:99495281..99497954,2	MCF-7	breast:
5	chr10:99476839..99480454-chr10:99481730..99484335,3	K562	blood:
6	chr10:99476464..99480454-chr10:99480682..99484335,5	K562	blood:

Variant related genes	Relation type
ENSG00000155256	Chromatin interaction
ENSG00000119986	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58039351	1.00[AMR][1000 genomes]
rs60277658	1.00[AMR][1000 genomes]
rs74152024	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8231	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv467441	chr10:99472710-99541104	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv552026	chr10:99472710-99541104	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99473800-99479000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr10:99474800-99478000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:99474800-99478000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr10:99475000-99478000	Weak transcription	Small Intestine	intestine
5	chr10:99475000-99479400	Weak transcription	Fetal Kidney	kidney
6	chr10:99475200-99478000	Weak transcription	Right Ventricle	heart
7	chr10:99475200-99478200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:99475200-99478200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:99475200-99478200	Weak transcription	Pancreas	Pancrea
10	chr10:99475400-99478000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr10:99475400-99478000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr10:99475400-99478000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:99475800-99478800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr10:99475800-99479200	Genic enhancers	Colon Smooth Muscle	Colon
15	chr10:99476000-99478000	Genic enhancers	A549	lung
16	chr10:99476000-99478400	Weak transcription	HSMMtube	muscle
17	chr10:99476000-99478800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr10:99476000-99479600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr10:99476000-99479600	Genic enhancers	Fetal Muscle Leg	muscle
20	chr10:99476000-99479600	Genic enhancers	Fetal Stomach	stomach
21	chr10:99476200-99478000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr10:99476200-99478000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:99476200-99479200	Genic enhancers	NHLF	lung
24	chr10:99476200-99479600	Genic enhancers	Fetal Muscle Trunk	muscle
25	chr10:99476200-99486600	Weak transcription	Ovary	ovary
26	chr10:99476400-99478000	Strong transcription	HUES48 Cell Line	embryonic stem cell
27	chr10:99476400-99478000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
28	chr10:99476400-99478000	Genic enhancers	Primary monocytes fromperipheralblood	blood
29	chr10:99476400-99478000	Weak transcription	Fetal Brain Female	brain
30	chr10:99476400-99478000	Weak transcription	Right Atrium	heart
31	chr10:99476400-99478200	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:99476400-99478400	Strong transcription	Fetal Lung	lung
33	chr10:99476400-99478600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
34	chr10:99476400-99478600	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr10:99476400-99479600	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr10:99476600-99478200	Genic enhancers	HMEC	breast
37	chr10:99476600-99478200	Genic enhancers	NHEK	skin
38	chr10:99476600-99478400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr10:99476600-99478600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr10:99476600-99479000	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr10:99476600-99479000	Genic enhancers	NHDF-Ad	bronchial
42	chr10:99476600-99479200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr10:99476600-99479600	Genic enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr10:99476600-99479800	Strong transcription	Osteobl	bone
45	chr10:99476600-99486200	Weak transcription	HUVEC	blood vessel
46	chr10:99476800-99478000	Strong transcription	Aorta	Aorta
47	chr10:99476800-99478400	Flanking Active TSS	Rectal Smooth Muscle	rectum
48	chr10:99477000-99478200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
49	chr10:99477000-99478200	Genic enhancers	Placenta	Placenta
50	chr10:99477000-99478400	Strong transcription	Dnd41	blood

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