Variant report

Variant	rs74152145
Chromosome Location	chr10:98931078-98931079
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs74152131	1.00[AMR][1000 genomes]
rs74152133	1.00[AMR][1000 genomes]
rs74152134	1.00[AMR][1000 genomes]
rs74152136	1.00[AMR][1000 genomes]
rs74153756	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	esv2758236	chr10:98789963-98962472	Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv2759777	chr10:98789963-98962472	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv7506	chr10:98902440-98940209	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1041614	chr10:98928281-99083056	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98923400-98939200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:98924800-98935600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr10:98925400-98935400	Weak transcription	Fetal Brain Female	brain
4	chr10:98929400-98932200	Enhancers	Fetal Lung	lung
5	chr10:98929800-98934200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:98929800-98935400	Weak transcription	Spleen	Spleen
7	chr10:98930200-98931200	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr10:98930200-98931200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr10:98930200-98931200	Enhancers	Psoas Muscle	Psoas
10	chr10:98930200-98931200	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr10:98930600-98931200	Enhancers	Fetal Brain Male	brain
12	chr10:98930600-98931200	Bivalent Enhancer	Fetal Muscle Leg	muscle
13	chr10:98930600-98931400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr10:98930600-98934400	Enhancers	Brain Germinal Matrix	brain
15	chr10:98930800-98931200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr10:98930800-98931200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr10:98931000-98931200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:98931000-98931200	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
19	chr10:98931000-98932200	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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