Variant report

Variant	rs74153626
Chromosome Location	chr10:98064464-98064465
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12258827	0.85[AFR][1000 genomes]
rs12260997	0.88[AFR][1000 genomes]
rs12261067	0.88[AFR][1000 genomes]
rs7094141	0.97[AFR][1000 genomes]
rs74153629	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3413353	chr10:98039370-98561524	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	esv2761620	chr10:98047045-98089749	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:98060000-98066200	Weak transcription	Spleen	Spleen
2	chr10:98060000-98068000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr10:98060600-98065800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr10:98060600-98066000	Weak transcription	Primary B cells from cord blood	blood
5	chr10:98061200-98066200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr10:98061400-98067800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr10:98061800-98066400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr10:98061800-98066400	Weak transcription	HUES64 Cell Line	embryonic stem cell
9	chr10:98062000-98066200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr10:98063200-98065800	Flanking Active TSS	Dnd41	blood
11	chr10:98063200-98067200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:98063800-98065200	Flanking Active TSS	Fetal Thymus	thymus
13	chr10:98064000-98064800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr10:98064000-98065600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
15	chr10:98064200-98064600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr10:98064200-98069400	Active TSS	Thymus	Thymus
17	chr10:98064400-98065600	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr10:98064400-98065800	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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