Variant report

Variant	rs74155478
Chromosome Location	chr1:209569206-209569207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209565872..209577230-chr1:209599783..209610462,26	MCF-7	breast:
2	chr1:209568284..209570251-chr1:209593131..209594689,2	MCF-7	breast:
3	chr1:209553994..209556272-chr1:209567588..209570552,2	MCF-7	breast:
4	chr1:209566790..209569253-chr1:209606717..209608620,2	MCF-7	breast:
5	chr1:209568446..209570232-chr1:209601693..209603599,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000230937	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs12116965	0.85[EUR][1000 genomes]
rs12119349	0.94[EUR][1000 genomes]
rs12119464	0.94[EUR][1000 genomes]
rs12119465	0.83[EUR][1000 genomes]
rs12120757	0.90[EUR][1000 genomes]
rs12120796	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12121931	0.90[EUR][1000 genomes]
rs12124710	0.83[EUR][1000 genomes]
rs12125358	0.90[EUR][1000 genomes]
rs12128640	0.85[EUR][1000 genomes]
rs12135244	0.88[EUR][1000 genomes]
rs12136870	0.85[EUR][1000 genomes]
rs12137134	0.83[EUR][1000 genomes]
rs12139847	0.88[EUR][1000 genomes]
rs12140172	0.81[EUR][1000 genomes]
rs12140436	0.94[EUR][1000 genomes]
rs12140751	0.94[EUR][1000 genomes]
rs12142846	0.83[AFR][1000 genomes]
rs12144443	0.81[EUR][1000 genomes]
rs12144663	0.94[EUR][1000 genomes]
rs12144725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12145858	0.85[EUR][1000 genomes]
rs1354851	0.83[AFR][1000 genomes]
rs1986792	0.85[AFR][1000 genomes]
rs55892452	0.89[AFR][1000 genomes]
rs6667906	0.84[AFR][1000 genomes]
rs74155466	0.83[EUR][1000 genomes]
rs74155471	0.85[EUR][1000 genomes]
rs74155479	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209561000-209571400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:209563200-209571400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr1:209563200-209572800	Weak transcription	Esophagus	oesophagus
4	chr1:209563600-209571200	Weak transcription	HSMM	muscle
5	chr1:209563600-209571400	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr1:209563600-209571600	Weak transcription	NH-A	brain
7	chr1:209565400-209570000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr1:209565800-209571600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr1:209566000-209571200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr1:209566200-209571400	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr1:209566400-209571200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr1:209567200-209584600	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr1:209567400-209571200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr1:209567400-209575600	Enhancers	ES-I3 Cell Line	embryonic stem cell
15	chr1:209567800-209569400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr1:209567800-209571800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:209568000-209569400	Enhancers	Fetal Stomach	stomach
18	chr1:209568000-209569600	Enhancers	A549	lung
19	chr1:209568200-209569600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:209568200-209571000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr1:209568400-209578200	Enhancers	HMEC	breast
22	chr1:209568600-209569400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:209568600-209569400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr1:209568600-209569600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr1:209568600-209569600	Enhancers	Hela-S3	cervix
26	chr1:209568800-209571000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr1:209569000-209570400	Enhancers	NHEK	skin
28	chr1:209569000-209571000	Weak transcription	Osteobl	bone
29	chr1:209569000-209571400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr1:209569000-209571400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr1:209569000-209571400	Weak transcription	Brain Substantia Nigra	brain
32	chr1:209569000-209571600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr1:209569000-209571800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr1:209569200-209570000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr1:209569200-209570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr1:209569200-209570600	Enhancers	Brain Hippocampus Middle	brain
37	chr1:209569200-209570800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr1:209569200-209571200	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr1:209569200-209571400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr1:209569200-209571400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr1:209569200-209571400	Weak transcription	NHLF	lung
42	chr1:209569200-209571600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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