Variant report

Variant	rs74155503
Chromosome Location	chr10:99303386-99303387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:99300634..99304686-chr10:99330230..99333325,5	MCF-7	breast:
2	chr10:99255227..99260148-chr10:99300104..99304804,10	MCF-7	breast:
3	chr10:99298484..99301202-chr10:99302783..99304402,2	MCF-7	breast:
4	chr10:99301268..99303688-chr10:99312791..99314821,3	MCF-7	breast:
5	chr10:99295454..99297833-chr10:99302850..99305384,2	MCF-7	breast:
6	chr10:99296911..99299412-chr10:99301338..99303433,2	K562	blood:
7	chr10:99300462..99303898-chr10:99329826..99332488,8	MCF-7	breast:
8	chr10:99296427..99298411-chr10:99301933..99303987,2	K562	blood:
9	chr10:99297536..99299525-chr10:99302249..99303762,2	MCF-7	breast:
10	chr10:99299652..99304961-chr10:99307189..99311108,10	MCF-7	breast:
11	chr10:99256059..99259971-chr10:99300252..99304004,11	MCF-7	breast:
12	chr10:99288750..99291143-chr10:99301999..99304983,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000165886	Chromatin interaction
ENSG00000155229	Chromatin interaction
ENSG00000165887	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs59319014	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73332755	1.00[AMR][1000 genomes]
rs74152202	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1817777	chr10:99196035-99558169	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1036494	chr10:99267639-99345207	Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases
3	nsv7508	chr10:99285375-99330501	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
4	esv992861	chr10:99298852-99305974	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99297200-99303600	Enhancers	Placenta	Placenta
2	chr10:99298200-99304200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr10:99298200-99304200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:99298200-99304200	Enhancers	Brain Hippocampus Middle	brain
5	chr10:99298400-99303600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr10:99298400-99304000	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:99298400-99304400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr10:99298600-99303800	Enhancers	Fetal Muscle Trunk	muscle
9	chr10:99298600-99304000	Enhancers	Fetal Muscle Leg	muscle
10	chr10:99299400-99304200	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr10:99300600-99306600	Weak transcription	Fetal Kidney	kidney
12	chr10:99300600-99309200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr10:99301200-99304200	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr10:99301600-99303400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:99301600-99303400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:99301600-99303400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr10:99301600-99303400	Enhancers	Stomach Mucosa	stomach
18	chr10:99301600-99303800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr10:99301600-99303800	Enhancers	Lung	lung
20	chr10:99301600-99304000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:99301600-99304000	Enhancers	Psoas Muscle	Psoas
22	chr10:99301800-99303400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:99301800-99303400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr10:99301800-99303400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr10:99301800-99303400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr10:99301800-99303400	Flanking Active TSS	A549	lung
27	chr10:99301800-99303400	Flanking Active TSS	NHLF	lung
28	chr10:99301800-99303600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
29	chr10:99301800-99303600	Enhancers	Left Ventricle	heart
30	chr10:99301800-99303600	Enhancers	K562	blood
31	chr10:99301800-99303600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr10:99301800-99303600	Flanking Active TSS	Osteobl	bone
33	chr10:99301800-99303800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:99301800-99303800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr10:99301800-99303800	Enhancers	Primary hematopoietic stem cells short term culture	blood
36	chr10:99301800-99303800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr10:99301800-99303800	Enhancers	Colon Smooth Muscle	Colon
38	chr10:99301800-99303800	Enhancers	Esophagus	oesophagus
39	chr10:99301800-99303800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:99301800-99303800	Enhancers	Ovary	ovary
41	chr10:99301800-99303800	Enhancers	Right Ventricle	heart
42	chr10:99301800-99303800	Enhancers	Spleen	Spleen
43	chr10:99301800-99304000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr10:99301800-99304000	Enhancers	Brain Cingulate Gyrus	brain
45	chr10:99301800-99304200	Enhancers	Right Atrium	heart
46	chr10:99301800-99304400	Enhancers	HUES6 Cell Line	embryonic stem cell
47	chr10:99302000-99303400	Enhancers	Duodenum Mucosa	Duodenum
48	chr10:99302200-99303400	Flanking Active TSS	HSMMtube	muscle
49	chr10:99302200-99303600	Enhancers	Small Intestine	intestine
50	chr10:99302200-99303800	Enhancers	Primary hematopoietic stem cells	blood

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