Variant report

Variant	rs74158060
Chromosome Location	chr10:116561224-116561225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs55739991	0.84[AFR][1000 genomes]
rs58930232	0.84[AFR][1000 genomes]
rs74158047	0.84[AFR][1000 genomes]
rs74158052	0.84[AFR][1000 genomes]
rs74158053	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	esv1814163	chr10:116519705-116582581	Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116556800-116566400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:116556800-116572800	Weak transcription	Pancreas	Pancrea
3	chr10:116559400-116561800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:116560000-116561800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
5	chr10:116560200-116561800	Flanking Active TSS	Dnd41	blood
6	chr10:116560200-116562200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr10:116560400-116561600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:116560600-116562400	Enhancers	Primary T cells from cord blood	blood
9	chr10:116560600-116562600	Enhancers	Primary T killer memory cells from peripheral blood	blood
10	chr10:116560600-116566000	Weak transcription	Hela-S3	cervix
11	chr10:116560800-116561600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr10:116560800-116561600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
13	chr10:116560800-116561600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr10:116560800-116561600	Flanking Active TSS	Thymus	Thymus
15	chr10:116560800-116561600	Flanking Active TSS	GM12878-XiMat	blood
16	chr10:116560800-116562000	Enhancers	Primary T helper naive cells from peripheral blood	blood
17	chr10:116560800-116562200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
18	chr10:116560800-116562200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr10:116561000-116561400	Enhancers	Primary B cells from peripheral blood	blood
20	chr10:116561000-116561400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr10:116561000-116561400	Flanking Active TSS	Fetal Thymus	thymus
22	chr10:116561000-116561600	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr10:116561000-116561600	Enhancers	Primary T helper cells fromperipheralblood	blood
24	chr10:116561000-116561600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr10:116561000-116561600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr10:116561000-116561600	Enhancers	Muscle Satellite Cultured Cells	--
27	chr10:116561000-116561600	Enhancers	HMEC	breast
28	chr10:116561200-116561400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:116561200-116561400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:116561200-116561400	Enhancers	HSMMtube	muscle
31	chr10:116561200-116561600	Weak transcription	Primary hematopoietic stem cells	blood
32	chr10:116561200-116561600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr10:116561200-116561600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr10:116561200-116561600	Enhancers	Right Ventricle	heart
35	chr10:116561200-116561800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr10:116561200-116562400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood

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