Variant report

Variant	rs74158085
Chromosome Location	chr10:116641093-116641094
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:116639834..116644233-chr10:116697414..116700996,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165832	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs74158087	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949138	chr10:116311531-116874477	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1038050	chr10:116315109-116895719	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
3	nsv533027	chr10:116344641-116856352	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3435429	chr10:116394152-117006347	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
5	nsv831996	chr10:116601552-116772968	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:116619400-116641600	Weak transcription	Aorta	Aorta
2	chr10:116636800-116641800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:116637000-116641200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:116637000-116641400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr10:116637000-116641400	Weak transcription	Stomach Mucosa	stomach
6	chr10:116637000-116641400	Weak transcription	HSMMtube	muscle
7	chr10:116637000-116641600	Weak transcription	NHEK	skin
8	chr10:116637000-116641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr10:116637000-116641800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr10:116637000-116641800	Weak transcription	NH-A	brain
11	chr10:116637000-116642200	Weak transcription	HMEC	breast
12	chr10:116638600-116641600	Weak transcription	Right Atrium	heart
13	chr10:116638800-116641400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr10:116639000-116642000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:116639000-116643000	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr10:116639200-116642200	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr10:116639200-116642800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr10:116639400-116641400	Enhancers	Brain Hippocampus Middle	brain
19	chr10:116639400-116642000	Enhancers	Fetal Kidney	kidney
20	chr10:116639400-116642000	Enhancers	Fetal Muscle Trunk	muscle
21	chr10:116639400-116642200	Enhancers	Fetal Stomach	stomach
22	chr10:116639600-116642000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:116639600-116642000	Enhancers	Fetal Intestine Large	intestine
24	chr10:116639600-116642200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr10:116639600-116642200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr10:116639600-116642400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:116639800-116641400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr10:116639800-116642000	Enhancers	Fetal Lung	lung
29	chr10:116639800-116642200	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr10:116639800-116642200	Enhancers	Placenta	Placenta
31	chr10:116639800-116642200	Enhancers	Ovary	ovary
32	chr10:116639800-116642200	Weak transcription	Osteobl	bone
33	chr10:116639800-116642600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr10:116639800-116642600	Weak transcription	A549	lung
35	chr10:116640000-116642000	Weak transcription	Hela-S3	cervix
36	chr10:116640400-116641800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr10:116640400-116642200	Enhancers	Rectal Smooth Muscle	rectum
38	chr10:116640400-116642800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr10:116640600-116641600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr10:116640600-116641600	Enhancers	Fetal Intestine Small	intestine
41	chr10:116640600-116641800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr10:116640600-116642000	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
43	chr10:116640800-116641200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr10:116640800-116641400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:116640800-116641400	Enhancers	Small Intestine	intestine
46	chr10:116640800-116641600	Enhancers	Fetal Muscle Leg	muscle
47	chr10:116641000-116641200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
48	chr10:116641000-116641400	Enhancers	Colon Smooth Muscle	Colon
49	chr10:116641000-116641800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr10:116641000-116641800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell

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