Variant report

Variant	rs74158920
Chromosome Location	chr1:210758206-210758207
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:210739072..210739725-chr1:210757502..210758390,2	K562	blood:
2	chr1:210757852..210758385-chr1:211308379..211308928,2	K562	blood:
3	chr1:210757518..210759006-chr1:211307144..211308415,6	MCF-7	breast:
4	chr1:210757426..210758481-chr1:211307046..211308192,11	K562	blood:
5	chr1:210757458..210758223-chr1:211123026..211123527,2	MCF-7	breast:
6	chr1:210757380..210759177-chr1:211306876..211309058,23	MCF-7	breast:
7	chr1:210547126..210548698-chr1:210757721..210760261,2	K562	blood:

Variant related genes	Relation type
ENSG00000143473	Chromatin interaction
ENSG00000200972	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs57677155	1.00[AMR][1000 genomes]
rs74158916	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv873149	chr1:210749312-210793972	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210752200-210761200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:210754800-210758600	Enhancers	HSMMtube	muscle
3	chr1:210756200-210761000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:210756200-210771800	Weak transcription	Left Ventricle	heart
5	chr1:210756400-210760000	Weak transcription	Fetal Heart	heart
6	chr1:210757200-210761200	Weak transcription	HSMM	muscle
7	chr1:210757800-210758400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr1:210757800-210758400	Enhancers	Fetal Brain Male	brain
9	chr1:210757800-210758600	Enhancers	A549	lung
10	chr1:210758000-210758400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:210758000-210758400	Enhancers	Brain Angular Gyrus	brain
12	chr1:210758000-210758400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:210758000-210758400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
14	chr1:210758000-210758400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
15	chr1:210758000-210758400	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr1:210758000-210758400	Enhancers	GM12878-XiMat	blood
17	chr1:210758000-210758400	Enhancers	NHDF-Ad	bronchial
18	chr1:210758000-210758600	Enhancers	Brain Anterior Caudate	brain
19	chr1:210758000-210758600	Enhancers	Brain Hippocampus Middle	brain
20	chr1:210758000-210758600	Enhancers	Brain Substantia Nigra	brain
21	chr1:210758000-210758800	Enhancers	Brain Cingulate Gyrus	brain
22	chr1:210758200-210759400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr1:210758200-210760200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr1:210758200-210761000	Weak transcription	Gastric	stomach

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