Variant report

Variant	rs74181580
Chromosome Location	chr20:1315278-1315279
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr20:1313519..1315747-chr20:1323872..1325859,2	MCF-7	breast:
2	chr20:1309366..1311231-chr20:1315229..1317243,2	MCF-7	breast:
3	chr20:1310189..1311997-chr20:1314145..1316733,2	K562	blood:
4	chr20:1315182..1316093-chr20:1420377..1420934,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000125775	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs34552580	1.00[ASN][1000 genomes]
rs35335677	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1057939	chr20:824980-1316778	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:1307200-1315400	Weak transcription	Aorta	Aorta
2	chr20:1307400-1319000	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr20:1307600-1315800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr20:1307600-1327200	Weak transcription	Fetal Brain Female	brain
5	chr20:1307600-1340400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr20:1307800-1316200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr20:1307800-1319400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr20:1308200-1317800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr20:1308400-1317000	Weak transcription	Brain Substantia Nigra	brain
10	chr20:1308800-1315400	Weak transcription	Fetal Heart	heart
11	chr20:1308800-1316800	Weak transcription	NH-A	brain
12	chr20:1308800-1317000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr20:1308800-1318000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr20:1309000-1322000	Weak transcription	HSMMtube	muscle
15	chr20:1309600-1315400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr20:1309600-1317200	Weak transcription	Colon Smooth Muscle	Colon
17	chr20:1309800-1315600	Strong transcription	Fetal Stomach	stomach
18	chr20:1309800-1335400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr20:1310000-1316800	Weak transcription	NHLF	lung
20	chr20:1310000-1317000	Weak transcription	Brain Hippocampus Middle	brain
21	chr20:1310000-1317600	Weak transcription	Ovary	ovary
22	chr20:1310000-1348800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr20:1310200-1315600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr20:1310200-1321400	Weak transcription	K562	blood
25	chr20:1310400-1316200	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr20:1311000-1317400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr20:1311000-1317600	Strong transcription	Dnd41	blood
28	chr20:1311400-1315400	Strong transcription	A549	lung
29	chr20:1311400-1316600	Weak transcription	Liver	Liver
30	chr20:1311400-1317000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr20:1311600-1316800	Weak transcription	Gastric	stomach
32	chr20:1311600-1316800	Weak transcription	GM12878-XiMat	blood
33	chr20:1311600-1317000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr20:1311600-1317000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr20:1311600-1317000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr20:1311600-1335200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr20:1311800-1315400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr20:1311800-1316800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr20:1311800-1317000	Weak transcription	Brain Angular Gyrus	brain
40	chr20:1311800-1317000	Weak transcription	Psoas Muscle	Psoas
41	chr20:1311800-1317200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr20:1311800-1317200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
43	chr20:1311800-1317400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr20:1311800-1317400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr20:1311800-1318200	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr20:1312000-1315600	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr20:1312000-1316000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr20:1312000-1316200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr20:1312000-1316600	Weak transcription	Right Atrium	heart
50	chr20:1312000-1316600	Weak transcription	Sigmoid Colon	Sigmoid Colon

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