Variant report

Variant	rs741879
Chromosome Location	chr21:16048842-16048843
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr21:16045852..16052768-chr21:16052792..16061174,10	K562	blood:
2	chr21:15919365..15921468-chr21:16048127..16050377,2	K562	blood:
3	chr21:16047229..16049844-chr21:16065016..16067632,2	K562	blood:
4	chr21:16044694..16046970-chr21:16047016..16050128,3	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs3888706	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs3895080	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs748911	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs760300	1.00[YRI][hapmap];1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:16044400-16050000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr21:16046200-16050800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr21:16047000-16050200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr21:16047400-16050800	Enhancers	Primary B cells from peripheral blood	blood
5	chr21:16047600-16050200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
6	chr21:16047600-16050600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr21:16047800-16049000	Enhancers	Fetal Thymus	thymus
8	chr21:16047800-16049600	Enhancers	HUVEC	blood vessel
9	chr21:16047800-16050800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr21:16048000-16049000	Flanking Active TSS	K562	blood
11	chr21:16048000-16049200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr21:16048000-16049200	Flanking Active TSS	Primary T cells from cord blood	blood
13	chr21:16048000-16049400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr21:16048000-16049400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
15	chr21:16048000-16049400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
16	chr21:16048000-16049400	Flanking Active TSS	GM12878-XiMat	blood
17	chr21:16048000-16050400	Flanking Active TSS	Dnd41	blood
18	chr21:16048200-16049000	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr21:16048200-16049000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
20	chr21:16048200-16049000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr21:16048200-16049200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
22	chr21:16048200-16049200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr21:16048200-16049200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
24	chr21:16048200-16050000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr21:16048400-16049000	Flanking Active TSS	Primary T cells fromperipheralblood	blood
26	chr21:16048400-16049600	Enhancers	Thymus	Thymus
27	chr21:16048600-16049000	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr21:16048600-16049000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr21:16048600-16050000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr21:16048600-16050800	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr21:16048800-16049000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
32	chr21:16048800-16049000	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr21:16048800-16049000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
34	chr21:16048800-16049600	Enhancers	Primary neutrophils fromperipheralblood	blood
35	chr21:16048800-16049600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr21:16048800-16049800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr21:16048800-16050000	Enhancers	Primary hematopoietic stem cells	blood

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