Variant report

Variant	rs74188474
Chromosome Location	chr19:27732063-27732064
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:29)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:29 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr19:27731802..27732517-chr6:28456742..28457568,2	NB4	blood:
2	chr19:27731523..27732363-chr8:52777077..52777577,2	MCF-7	breast:
3	chr19:27731229..27733214-chr8:102884050..102885632,2	MCF-7	breast:
4	chr19:27731712..27733212-chr19:27736249..27738480,2	MCF-7	breast:
5	chr10:71897930..71900730-chr19:27730502..27732728,2	MCF-7	breast:
6	chr19:27731258..27733523-chr2:232326492..232328767,2	MCF-7	breast:
7	chr19:27730503..27733214-chr19:27735926..27737745,2	K562	blood:
8	chr19:27731523..27732363-chr6:45117749..45118249,2	MCF-7	breast:
9	chr1:121483052..121485434-chr19:27730501..27733191,4	MCF-7	breast:
10	chr1:121482676..121485402-chr19:27730501..27733214,12	K562	blood:
11	chr19:27732023..27732564-chr2:239212879..239213848,2	MCF-7	breast:
12	chr10:42528302..42530981-chr19:27731210..27733512,2	MCF-7	breast:
13	chr19:27730503..27732709-chr9:139305201..139307172,2	MCF-7	breast:
14	chr19:27731227..27733512-chr20:55840170..55842696,2	MCF-7	breast:
15	chr12:34844846..34846346-chr19:27730625..27733192,2	K562	blood:
16	chr1:121483185..121485419-chr19:27730521..27734410,16	K562	blood:
17	chr10:42397869..42400416-chr19:27731046..27733513,2	MCF-7	breast:
18	chr19:18390431..18393009-chr19:27731584..27734229,2	MCF-7	breast:
19	chr12:34844825..34846346-chr19:27731692..27733219,2	K562	blood:
20	chr17:59482833..59484547-chr19:27731694..27733523,2	MCF-7	breast:
21	chr19:27732023..27732712-chr20:46012477..46013112,2	MCF-7	breast:
22	chr10:38146701..38147201-chr19:27732023..27732863,2	NB4	blood:
23	chr1:121482654..121485417-chr19:27730386..27733214,11	MCF-7	breast:
24	chr10:42526475..42528192-chr19:27731227..27733212,2	MCF-7	breast:
25	chr12:34844846..34846346-chr19:27731700..27733247,2	MCF-7	breast:
26	chr17:56707857..56709514-chr19:27731768..27734278,2	MCF-7	breast:
27	chr1:149855028..149856935-chr19:27731051..27732710,2	MCF-7	breast:
28	chr19:27731209..27732712-chr3:104107101..104108601,2	MCF-7	breast:
29	chr19:27731229..27733515-chr19:27737682..27740212,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000226308	Chromatin interaction
ENSG00000198105	Chromatin interaction
ENSG00000130522	Chromatin interaction
ENSG00000212195	Chromatin interaction
ENSG00000267959	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000115053	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:33 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398485	chr19:27731783-27736296	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
2	nsv961285	chr19:27731783-28407818	Active TSS Weak transcription ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	esv3349038	chr19:27731786-27732234	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	11 gene(s)	inside rSNPs	n/a
4	esv3359215	chr19:27731806-27732627	ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
5	esv5456	chr19:27731815-27733059	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
6	esv10692	chr19:27731835-27741199	Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
7	esv3450512	chr19:27731846-27732174	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	n/a
8	esv3406870	chr19:27731866-27732144	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	9 gene(s)	inside rSNPs	n/a
9	esv3392989	chr19:27731874-27733840	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
10	esv3429955	chr19:27731880-27732825	ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Weak transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
11	esv3335080	chr19:27731889-27732665	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
12	esv3389446	chr19:27731970-27733425	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
13	esv3443406	chr19:27731991-27735488	ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
14	nsv579117	chr19:27732000-27737113	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
15	nsv579118	chr19:27732000-27737699	Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
16	nsv579119	chr19:27732000-27738847	ZNF genes & repeats Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
17	nsv579120	chr19:27732000-27740875	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
18	nsv579121	chr19:27732000-27769717	ZNF genes & repeats Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
19	nsv579122	chr19:27732000-27884796	ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
20	esv1792884	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
21	esv1813820	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
22	esv1817017	chr19:27732000-27972553	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
23	esv1818457	chr19:27732000-27972553	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
24	esv1829019	chr19:27732000-27972553	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
25	esv1813626	chr19:27732000-28036744	ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
26	esv6253	chr19:27732001-27740579	ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Weak transcription Enhancers	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
27	esv9522	chr19:27732002-27740579	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Enhancers Active TSS	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
28	esv6019	chr19:27732011-27733939	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
29	esv6189	chr19:27732011-27740575	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	22 gene(s)	inside rSNPs	n/a
30	esv3424028	chr19:27732023-27737547	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	14 gene(s)	inside rSNPs	n/a
31	esv3387319	chr19:27732052-27733167	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
32	esv3361410	chr19:27732058-27734534	ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a
33	esv3329351	chr19:27732064-27734200	ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	12 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:27731800-27732200	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	Primary T cells from cord blood	blood
5	chr19:27731800-27732400	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	Dnd41	blood
7	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	HSMM	muscle
8	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	K562	blood
9	chr19:27731800-27732400	Flanking Bivalent TSS/Enh	NHLF	lung
10	chr19:27731800-27732600	ZNF genes & repeats	Right Atrium	heart
11	chr19:27731800-27732600	ZNF genes & repeats	HepG2	liver
12	chr19:27731800-27733000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
13	chr19:27731800-27733000	ZNF genes & repeats	Fetal Kidney	kidney
14	chr19:27731800-27733000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
15	chr19:27731800-27733400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr19:27731800-27733400	Flanking Bivalent TSS/Enh	Aorta	Aorta
17	chr19:27731800-27733400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
18	chr19:27731800-27733400	ZNF genes & repeats	Right Ventricle	heart
19	chr19:27731800-27733400	Flanking Bivalent TSS/Enh	NH-A	brain
20	chr19:27731800-27733400	ZNF genes & repeats	NHEK	skin
21	chr19:27731800-27733600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
22	chr19:27731800-27733600	ZNF genes & repeats	Fetal Intestine Small	intestine
23	chr19:27731800-27733600	Flanking Bivalent TSS/Enh	Gastric	stomach
24	chr19:27731800-27733600	Flanking Bivalent TSS/Enh	Hela-S3	cervix
25	chr19:27731800-27734600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr19:27731800-27734600	ZNF genes & repeats	Brain Germinal Matrix	brain
27	chr19:27731800-27734600	ZNF genes & repeats	Placenta	Placenta
28	chr19:27731800-27734800	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr19:27731800-27734800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:27731800-27734800	ZNF genes & repeats	Esophagus	oesophagus
31	chr19:27731800-27734800	ZNF genes & repeats	Pancreas	Pancrea
32	chr19:27731800-27734800	ZNF genes & repeats	Placenta Amnion	Placenta Amnion
33	chr19:27731800-27734800	ZNF genes & repeats	GM12878-XiMat	blood
34	chr19:27731800-27735000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr19:27731800-27735000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
36	chr19:27731800-27735000	ZNF genes & repeats	Fetal Brain Female	brain
37	chr19:27731800-27735400	ZNF genes & repeats	Fetal Thymus	thymus
38	chr19:27731800-27736200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr19:27731800-27737000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
40	chr19:27731800-27737000	ZNF genes & repeats	Osteobl	bone
41	chr19:27731800-27738600	ZNF genes & repeats	Thymus	Thymus
42	chr19:27731800-27739000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
43	chr19:27731800-27739600	ZNF genes & repeats	Primary B cells from peripheral blood	blood
44	chr19:27731800-27739600	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chr19:27731800-27739600	ZNF genes & repeats	Fetal Intestine Large	intestine
46	chr19:27731800-27739600	ZNF genes & repeats	Ovary	ovary
47	chr19:27731800-27739600	ZNF genes & repeats	Spleen	Spleen
48	chr19:27731800-27739800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr19:27731800-27739800	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr19:27731800-27739800	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood

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