Variant report

Variant	rs74204911
Chromosome Location	chr12:20539023-20539024
allele	-/ATA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048067	chr12:20363755-20874845	Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv541408	chr12:20363755-20874845	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1046870	chr12:20509914-20711535	Active TSS Genic enhancers Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
4	nsv541409	chr12:20509914-20711535	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases
5	nsv1042315	chr12:20531641-20629866	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3322484	chr12:20537910-20540458	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3446622	chr12:20538035-20540133	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20525600-20543000	Weak transcription	NHDF-Ad	bronchial
2	chr12:20526800-20541000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:20528600-20542000	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr12:20533000-20541400	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr12:20533200-20544800	Weak transcription	Right Atrium	heart
6	chr12:20534600-20542200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr12:20536400-20540000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:20536800-20540200	Weak transcription	Colon Smooth Muscle	Colon
9	chr12:20536800-20542000	Weak transcription	Aorta	Aorta
10	chr12:20536800-20542000	Weak transcription	Right Ventricle	heart
11	chr12:20536800-20542200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr12:20536800-20542400	Weak transcription	A549	lung
13	chr12:20537000-20541400	Weak transcription	Hela-S3	cervix
14	chr12:20537800-20542000	Weak transcription	Fetal Intestine Small	intestine
15	chr12:20538200-20539600	Weak transcription	Fetal Intestine Large	intestine
16	chr12:20538200-20550400	Weak transcription	HUVEC	blood vessel
17	chr12:20538200-20558000	Weak transcription	Left Ventricle	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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