Variant report

Variant	rs742115
Chromosome Location	chr6:11327021-11327022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:11319797..11323396-chr6:11323814..11327323,3	K562	blood:
2	chr6:11326905..11328679-chr6:11331307..11333845,2	MCF-7	breast:
3	chr6:11228813..11233074-chr6:11326646..11330148,4	MCF-7	breast:
4	chr6:11325686..11327931-chr6:11338135..11341072,2	MCF-7	breast:
5	chr6:11326756..11328285-chr6:11329313..11331620,2	K562	blood:

Variant related genes	Relation type
ENSG00000111859	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1883240	0.89[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021078	chr6:10819083-11558560	Enhancers Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv538135	chr6:10819083-11558560	Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:11316200-11329800	Weak transcription	Right Atrium	heart
2	chr6:11319400-11330600	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:11319600-11328000	Weak transcription	Small Intestine	intestine
4	chr6:11319600-11328200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr6:11319600-11330000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr6:11319600-11330400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:11319800-11328800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr6:11319800-11330600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr6:11319800-11330800	Weak transcription	Fetal Stomach	stomach
10	chr6:11320000-11328400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:11320000-11329800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr6:11320000-11330200	Weak transcription	Gastric	stomach
13	chr6:11320000-11330600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr6:11320200-11327400	Weak transcription	Primary T helper cells fromperipheralblood	blood
15	chr6:11320200-11328000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr6:11320200-11329600	Weak transcription	Duodenum Mucosa	Duodenum
17	chr6:11320200-11329800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
18	chr6:11320200-11330600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr6:11320400-11329000	Weak transcription	Fetal Muscle Leg	muscle
20	chr6:11320400-11329400	Weak transcription	Pancreas	Pancrea
21	chr6:11322600-11327200	Enhancers	HepG2	liver
22	chr6:11322600-11331200	Enhancers	Placenta	Placenta
23	chr6:11323000-11328600	Weak transcription	NH-A	brain
24	chr6:11324400-11329200	Weak transcription	Colonic Mucosa	Colon
25	chr6:11324400-11329400	Weak transcription	Stomach Mucosa	stomach
26	chr6:11324600-11328200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr6:11324600-11329200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr6:11324600-11329200	Weak transcription	Adipose Nuclei	Adipose
29	chr6:11324800-11328000	Weak transcription	Lung	lung
30	chr6:11324800-11329000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:11324800-11329600	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr6:11325000-11327400	Enhancers	Primary neutrophils fromperipheralblood	blood
33	chr6:11325000-11328400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr6:11325000-11330200	Weak transcription	Fetal Kidney	kidney
35	chr6:11325000-11330600	Weak transcription	Spleen	Spleen
36	chr6:11325200-11328000	Weak transcription	A549	lung
37	chr6:11325200-11328200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr6:11325200-11328200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr6:11325200-11328200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr6:11325200-11328400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr6:11325200-11329600	Weak transcription	Primary hematopoietic stem cells	blood
42	chr6:11325200-11330600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr6:11325400-11327200	Weak transcription	Primary B cells from cord blood	blood
44	chr6:11325400-11328200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr6:11325400-11328400	Weak transcription	Osteobl	bone
46	chr6:11325400-11330400	Weak transcription	Thymus	Thymus
47	chr6:11325600-11327800	Weak transcription	Fetal Thymus	thymus
48	chr6:11325800-11327200	Enhancers	Fetal Intestine Small	intestine
49	chr6:11325800-11327400	Weak transcription	Primary T cells from cord blood	blood
50	chr6:11326000-11327400	Enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links