Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11964064	0.81[EUR][1000 genomes]
rs12198676	0.83[ASN][1000 genomes]
rs12201817	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12201861	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12213814	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1971444	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1971445	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2063677	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2063678	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2073042	0.97[EUR][1000 genomes]
rs2281275	0.97[EUR][1000 genomes]
rs379650	0.83[ASN][1000 genomes]
rs392108	0.83[ASN][1000 genomes]
rs443430	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67325872	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6918242	0.97[EUR][1000 genomes]
rs72819438	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7768553	0.83[ASN][1000 genomes]
rs9328267	0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9328268	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9378408	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9392619	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9405760	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3366530	chr6:4471528-4865322	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv528627	chr6:4614058-4731340	Flanking Bivalent TSS/Enh Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv883416	chr6:4666878-4690760	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:4664000-4669600	Enhancers	K562	blood
2	chr6:4664800-4668600	Weak transcription	HSMM	muscle
3	chr6:4665000-4668600	Weak transcription	NHDF-Ad	bronchial
4	chr6:4665000-4670400	Weak transcription	Fetal Muscle Leg	muscle
5	chr6:4665000-4680400	Weak transcription	Right Atrium	heart
6	chr6:4665200-4668600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr6:4665200-4670400	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:4666000-4670400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr6:4666600-4668000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr6:4666600-4668000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:4666600-4672400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:4666800-4668600	Weak transcription	HSMMtube	muscle
13	chr6:4666800-4668600	Weak transcription	NH-A	brain
14	chr6:4667000-4668400	Weak transcription	Osteobl	bone
15	chr6:4667200-4668200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:4667800-4668800	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr6:4667800-4669200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr6:4667800-4669400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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