Variant report

Variant	rs7426793
Chromosome Location	chr3:90251951-90251952
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10470576	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12637691	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13072194	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2198957	0.82[EUR][1000 genomes]
rs4974358	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6551450	0.84[EUR][1000 genomes]
rs6551451	0.81[EUR][1000 genomes]
rs7429720	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7433265	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7653828	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9682090	0.86[EUR][1000 genomes]
rs9683286	0.80[EUR][1000 genomes]
rs9840464	0.82[EUR][1000 genomes]
rs9849053	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9864344	0.81[EUR][1000 genomes]
rs9868785	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008018	chr3:89382031-90254063	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv536639	chr3:89382031-90254063	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv530024	chr3:89548440-90304841	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv590970	chr3:89987871-90441306	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3387286	chr3:90250512-90254210	Enhancers Weak transcription	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:90250600-90253800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr3:90250600-90254000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr3:90250800-90252000	Enhancers	Primary hematopoietic stem cells	blood
4	chr3:90251200-90255800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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