Variant report

Variant	rs742680
Chromosome Location	chr1:77476415-77476416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1102443	0.82[AMR][1000 genomes]
rs12726495	0.82[AMR][1000 genomes]
rs2003707	0.85[AMR][1000 genomes]
rs34981569	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4949764	0.85[AMR][1000 genomes]
rs67296422	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003826	chr1:76965331-77656929	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv535006	chr1:76965331-77656929	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv830292	chr1:77425571-77584307	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv2762156	chr1:77471731-77477794	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3349085	chr1:77475364-77477762	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3374099	chr1:77476399-77476737	Enhancers Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:77465200-77480200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr1:77465200-77483600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:77465200-77484200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:77465200-77484200	Weak transcription	NHEK	skin
5	chr1:77471600-77484200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr1:77472800-77487600	Weak transcription	Aorta	Aorta
7	chr1:77475400-77486000	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr1:77476200-77476800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:77476200-77477200	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr1:77476200-77477200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr1:77476400-77477000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr1:77476400-77477000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:77476400-77477200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:77476400-77477200	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr1:77476400-77477200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr1:77476400-77477200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
17	chr1:77476400-77478200	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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