Variant report

Variant	rs742853
Chromosome Location	chr20:22827321-22827322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1106896	1.00[TSI][hapmap]
rs11908185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1331072	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1331074	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1331078	1.00[TSI][hapmap]
rs1331079	1.00[TSI][hapmap]
rs1411782	0.87[AMR][1000 genomes]
rs1411784	1.00[TSI][hapmap]
rs16984593	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16984596	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16984600	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs16984633	1.00[TSI][hapmap]
rs16984646	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16984671	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs16984679	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs16984680	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs2022610	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs2022611	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4479491	0.86[AMR][1000 genomes]
rs55699632	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs55798808	0.87[AMR][1000 genomes]
rs55921313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56000393	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs56085198	0.90[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs58220952	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60092913	0.84[AFR][1000 genomes]
rs60238502	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs60822844	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61567760	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs73900755	0.82[AFR][1000 genomes]
rs73900756	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs8125940	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs874335	1.00[TSI][hapmap]
rs9680076	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22822000-22831600	Weak transcription	A549	lung
2	chr20:22827000-22828000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr20:22827200-22827800	Enhancers	Lung	lung

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