Variant report

Variant	rs7428837
Chromosome Location	chr3:68106935-68106936
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11706410	0.91[ASN][1000 genomes]
rs11708116	0.94[ASN][1000 genomes]
rs11709861	0.86[ASN][1000 genomes]
rs12486136	0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13085443	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13085628	0.86[ASN][1000 genomes]
rs4129248	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4130988	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130989	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4130990	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6419759	0.89[ASN][1000 genomes]
rs6548962	0.95[ASN][1000 genomes]
rs6548980	0.91[ASN][1000 genomes]
rs6548981	0.91[ASN][1000 genomes]
rs6548984	0.91[ASN][1000 genomes]
rs6548985	0.91[ASN][1000 genomes]
rs6548999	0.91[ASN][1000 genomes]
rs6549020	0.83[ASN][1000 genomes]
rs6768632	0.85[ASN][1000 genomes]
rs6774687	0.86[ASN][1000 genomes]
rs7429303	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7430480	0.84[ASN][1000 genomes]
rs7430568	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7433022	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7433028	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7638117	0.86[ASN][1000 genomes]
rs9815465	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9820035	0.86[ASN][1000 genomes]
rs9868432	0.85[ASN][1000 genomes]
rs9870065	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002010	chr3:67785913-68312064	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1009871	chr3:67862617-68312064	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv536583	chr3:67862617-68312064	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1010231	chr3:67894825-68117879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv999747	chr3:68066423-68188180	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv536584	chr3:68066423-68188180	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2752014	chr3:68091879-68416989	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1007450	chr3:68094416-68346546	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:68105000-68109000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr3:68105200-68107000	Enhancers	Primary T killer memory cells from peripheral blood	blood
3	chr3:68105400-68107000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr3:68105400-68108400	Weak transcription	Fetal Intestine Large	intestine
5	chr3:68106000-68108200	Weak transcription	Small Intestine	intestine
6	chr3:68106200-68108000	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr3:68106200-68108200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr3:68106200-68108600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr3:68106200-68108600	Weak transcription	Fetal Intestine Small	intestine
10	chr3:68106600-68107000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:68106600-68107800	Active TSS	Primary T cells fromperipheralblood	blood
12	chr3:68106600-68107800	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
13	chr3:68106600-68108400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
14	chr3:68106600-68108600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr3:68106800-68107000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
16	chr3:68106800-68107000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr3:68106800-68107200	Active TSS	Primary T helper naive cells from peripheral blood	blood
18	chr3:68106800-68107400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:68106800-68107600	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr3:68106800-68108400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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