Variant report

Variant	rs7431241
Chromosome Location	chr3:161571447-161571448
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs13095765	0.87[EUR][1000 genomes]
rs2220684	0.87[EUR][1000 genomes]
rs4856730	0.87[EUR][1000 genomes]
rs6441409	0.87[EUR][1000 genomes]
rs6771433	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6796264	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7433024	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2757901	chr3:161449993-161593770	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv2759195	chr3:161449993-161593770	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv3395930	chr3:161552299-161584754	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161566600-161572400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:161570400-161572400	Enhancers	Fetal Intestine Small	intestine
3	chr3:161570400-161573800	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr3:161571000-161572000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
5	chr3:161571000-161572200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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