Variant report

Variant	rs7432679
Chromosome Location	chr3:54030467-54030468
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10049404	0.94[AFR][1000 genomes]
rs58649828	0.94[AFR][1000 genomes]
rs59501182	1.00[AFR][1000 genomes]
rs60794910	1.00[AFR][1000 genomes]
rs61679510	1.00[AFR][1000 genomes]
rs6768620	0.94[AFR][1000 genomes]
rs6803364	1.00[AFR][1000 genomes]
rs72974992	1.00[AFR][1000 genomes]
rs72976710	0.94[AFR][1000 genomes]
rs72976714	0.84[AFR][1000 genomes]
rs7630169	0.94[AFR][1000 genomes]
rs9311521	0.94[AFR][1000 genomes]
rs9815905	1.00[AFR][1000 genomes]
rs9852767	1.00[AFR][1000 genomes]
rs9853506	1.00[AFR][1000 genomes]
rs9864147	0.94[AFR][1000 genomes]
rs9876974	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003621	chr3:53448934-54425322	Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv1006990	chr3:53849510-54285212	Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv1014752	chr3:53912429-54123246	Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1005411	chr3:53927782-54158638	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv1014595	chr3:53944473-54846754	Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv523473	chr3:54010039-54033865	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7432679	IL17RB	cis	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:54028800-54030600	Enhancers	Right Atrium	heart
2	chr3:54029200-54031600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr3:54029800-54031000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr3:54029800-54031400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr3:54030000-54030800	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr3:54030000-54031400	Enhancers	Placenta	Placenta
7	chr3:54030000-54032000	Flanking Active TSS	Hela-S3	cervix
8	chr3:54030200-54030600	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr3:54030200-54030800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:54030200-54030800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr3:54030200-54030800	Enhancers	Placenta Amnion	Placenta Amnion
12	chr3:54030400-54030600	Enhancers	Stomach Mucosa	stomach
13	chr3:54030400-54030600	Enhancers	HMEC	breast
14	chr3:54030400-54030800	Enhancers	Sigmoid Colon	Sigmoid Colon

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links