Variant report

Variant	rs7432905
Chromosome Location	chr3:55915612-55915613
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1350414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1350415	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1458067	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1458068	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1993539	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72879133	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9818424	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9857973	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9881976	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013063	chr3:55835413-56173713	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv876815	chr3:55895409-55979964	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:55893600-55923600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr3:55903800-55922000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:55912200-55916000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:55913200-55916800	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:55913200-55916800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr3:55913400-55915800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:55913400-55916800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr3:55913400-55919400	Weak transcription	Fetal Kidney	kidney
9	chr3:55914200-55918000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:55914200-55918600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:55914200-55919200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:55914600-55916000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr3:55914600-55919000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr3:55914600-55919000	Weak transcription	NHLF	lung
15	chr3:55914800-55918000	Weak transcription	NHEK	skin
16	chr3:55914800-55918400	Weak transcription	Hela-S3	cervix
17	chr3:55914800-55918600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:55914800-55919200	Weak transcription	Fetal Lung	lung
19	chr3:55915400-55916800	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr3:55915400-55917600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:55915400-55918400	Weak transcription	HMEC	breast
22	chr3:55915400-55925800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr3:55915600-55916800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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