Variant report

Variant	rs7436262
Chromosome Location	chr4:56892073-56892074
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs13138432	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2611822	0.81[JPT][hapmap]
rs2969532	0.82[JPT][hapmap]
rs4865047	1.00[YRI][hapmap]
rs6856844	0.94[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap]
rs9312669	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56816600-56896400	Weak transcription	Fetal Heart	heart
2	chr4:56819000-56897400	Weak transcription	HSMMtube	muscle
3	chr4:56820600-56892400	Weak transcription	Hela-S3	cervix
4	chr4:56823600-56893800	Weak transcription	HMEC	breast
5	chr4:56835400-56904800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr4:56837200-56905000	Weak transcription	Brain Substantia Nigra	brain
7	chr4:56839800-56896600	Weak transcription	Brain Angular Gyrus	brain
8	chr4:56856200-56892600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr4:56857600-56897400	Strong transcription	Fetal Thymus	thymus
10	chr4:56857600-56898200	Strong transcription	Dnd41	blood
11	chr4:56857600-56898200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr4:56863200-56892600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr4:56864600-56894200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:56864800-56892200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:56865400-56894400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:56866200-56895000	Weak transcription	Lung	lung
17	chr4:56866800-56896000	Weak transcription	Small Intestine	intestine
18	chr4:56867000-56895000	Weak transcription	Psoas Muscle	Psoas
19	chr4:56867200-56892200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr4:56872200-56893200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr4:56872200-56904800	Weak transcription	HepG2	liver
22	chr4:56873400-56897000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr4:56876600-56895400	Weak transcription	Brain Anterior Caudate	brain
24	chr4:56879000-56892800	Weak transcription	NHEK	skin
25	chr4:56879200-56893400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr4:56880000-56897400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr4:56880400-56897200	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:56880600-56898200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:56883600-56897200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr4:56883800-56893400	Strong transcription	Primary hematopoietic stem cells	blood
31	chr4:56883800-56895800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr4:56883800-56897000	Strong transcription	Adipose Nuclei	Adipose
33	chr4:56883800-56897600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:56885200-56895200	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:56886400-56892800	Weak transcription	Rectal Smooth Muscle	rectum
36	chr4:56886400-56899600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr4:56887200-56892800	Weak transcription	NH-A	brain
38	chr4:56887800-56892600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr4:56887800-56893400	Strong transcription	Ovary	ovary
40	chr4:56887800-56897200	Strong transcription	Thymus	Thymus
41	chr4:56888600-56898600	Weak transcription	Gastric	stomach
42	chr4:56890400-56892200	Strong transcription	Sigmoid Colon	Sigmoid Colon
43	chr4:56890400-56893800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr4:56890400-56897000	Strong transcription	Primary T helper cells fromperipheralblood	blood
45	chr4:56890400-56897200	Strong transcription	Primary T cells fromperipheralblood	blood
46	chr4:56890600-56892200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr4:56890600-56892200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:56890600-56892400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr4:56890600-56892400	Strong transcription	Fetal Brain Female	brain
50	chr4:56890600-56892800	Strong transcription	Brain Hippocampus Middle	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links