Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1042073	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs11130091	0.80[CEU][hapmap]
rs1126478	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs11707471	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[TSI][hapmap]
rs11716497	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[JPT][hapmap]
rs4234463	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap]
rs4683234	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.84[GIH][hapmap];0.90[JPT][hapmap];1.00[TSI][hapmap]
rs6441990	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6441992	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap]
rs6441995	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.85[JPT][hapmap];1.00[TSI][hapmap]
rs6776504	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs6794622	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap]
rs9862186	0.81[CEU][hapmap]
rs9862388	1.00[CEU][hapmap];0.91[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3323840	chr3:46352348-46497196	Strong transcription Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv3389382	chr3:46352798-46496696	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1014624	chr3:46463424-46549188	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
4	nsv1013306	chr3:46469014-46698538	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46455800-46496800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:46459400-46491600	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:46480200-46504000	Weak transcription	Lung	lung
4	chr3:46484800-46495000	Weak transcription	Fetal Intestine Small	intestine
5	chr3:46486400-46490400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr3:46486800-46490200	Weak transcription	Gastric	stomach
7	chr3:46486800-46490600	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:46488400-46489400	Enhancers	NHEK	skin
9	chr3:46488600-46489200	Genic enhancers	Adipose Nuclei	Adipose
10	chr3:46488600-46489400	Strong transcription	Pancreas	Pancrea
11	chr3:46488600-46489800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:46488800-46489200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:46488800-46489200	Genic enhancers	Spleen	Spleen
14	chr3:46488800-46489400	Enhancers	Left Ventricle	heart
15	chr3:46488800-46489400	Enhancers	Right Ventricle	heart
16	chr3:46488800-46489400	Enhancers	Monocytes-CD14+_RO01746	blood
17	chr3:46488800-46489600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:46489000-46489400	Enhancers	Fetal Muscle Leg	muscle
19	chr3:46489000-46489400	Enhancers	Right Atrium	heart
20	chr3:46489000-46489600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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