Variant report
| Variant | rs74372427 |
|---|---|
| Chromosome Location | chr3:109463909-109463910 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:63952505..63954555-chr3:109463070..109465225,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000168439 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv460815 | chr3:109447463-109484302 | Enhancers ZNF genes & repeats Weak transcription | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 2 | nsv591269 | chr3:109447463-109496029 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| 3 | nsv1009075 | chr3:109462019-109800029 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv591270 | chr3:109462400-109793785 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 5 | nsv220525 | chr3:109463909-109463911 | Inactive region | Chromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
