Variant report

Variant	rs74511884
Chromosome Location	chr1:180632079-180632080
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003359	chr1:180300936-180727561	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	48 gene(s)	inside rSNPs	diseases
2	nsv949311	chr1:180438895-180692815	ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
3	nsv872578	chr1:180510771-180842344	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	esv988017	chr1:180630648-180639452	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:180602000-180645200	Weak transcription	Gastric	stomach
2	chr1:180613200-180632600	Weak transcription	Aorta	Aorta
3	chr1:180619600-180632600	Weak transcription	Pancreas	Pancrea
4	chr1:180619600-180634600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:180625800-180634800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr1:180627600-180632800	Weak transcription	A549	lung
7	chr1:180627600-180640000	Weak transcription	Fetal Heart	heart
8	chr1:180627800-180634200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr1:180629200-180633800	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:180629600-180632600	Weak transcription	Primary T helper cells fromperipheralblood	blood
11	chr1:180629600-180641000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr1:180630800-180634400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr1:180631000-180633600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr1:180631000-180634200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr1:180631200-180635000	Weak transcription	HMEC	breast
16	chr1:180631200-180636000	Weak transcription	Ovary	ovary
17	chr1:180631400-180635000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:180631600-180632200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr1:180631600-180632400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr1:180631600-180644400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:180631800-180632600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:180631800-180633400	Weak transcription	Left Ventricle	heart
23	chr1:180631800-180635000	ZNF genes & repeats	Fetal Brain Female	brain
24	chr1:180632000-180632400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
25	chr1:180632000-180632800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
26	chr1:180632000-180633000	ZNF genes & repeats	Primary T cells from cord blood	blood

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