Variant report

Variant	rs74512546
Chromosome Location	chr11:86542408-86542409
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:86542302-86542466	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000269895	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv975959	chr11:86534725-86568919	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1836220	chr11:86542005-86573310	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86520000-86549200	Weak transcription	Ovary	ovary
2	chr11:86521000-86551400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:86522800-86544400	Weak transcription	Fetal Kidney	kidney
4	chr11:86528000-86542600	Weak transcription	Adipose Nuclei	Adipose
5	chr11:86528800-86545400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr11:86529600-86543400	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:86530200-86542800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:86530200-86549000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:86530200-86549000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr11:86530200-86549000	Weak transcription	HMEC	breast
11	chr11:86530200-86550800	Weak transcription	HUVEC	blood vessel
12	chr11:86530400-86548600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:86530400-86549200	Weak transcription	Aorta	Aorta
14	chr11:86530400-86551000	Weak transcription	A549	lung
15	chr11:86530400-86551400	Weak transcription	Osteobl	bone
16	chr11:86531000-86549400	Weak transcription	Colon Smooth Muscle	Colon
17	chr11:86533000-86548600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:86534600-86549200	Weak transcription	Fetal Stomach	stomach
19	chr11:86534800-86550800	Weak transcription	HSMM	muscle
20	chr11:86537200-86580600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:86541400-86544400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr11:86541400-86544800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr11:86541600-86544600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr11:86541800-86544400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr11:86541800-86544600	Strong transcription	Stomach Smooth Muscle	stomach
26	chr11:86541800-86548600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr11:86542000-86544400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr11:86542000-86545000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr11:86542200-86545000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:86542200-86547800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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