Variant report

Variant	rs74539188
Chromosome Location	chr20:16561184-16561185
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr20:16550509..16554024-chr20:16560848..16563415,3	MCF-7	breast:
2	chr20:16554484..16557263-chr20:16559352..16563570,6	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2762064	chr20:16558260-16568062	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
2	nsv1058496	chr20:16558260-16575531	Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv517032	chr20:16560990-16585314	Weak transcription Enhancers Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:16556400-16562400	Weak transcription	Left Ventricle	heart
2	chr20:16559400-16562000	Enhancers	Fetal Intestine Large	intestine
3	chr20:16559600-16561200	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr20:16559600-16561800	Enhancers	Rectal Mucosa Donor 29	rectum
5	chr20:16559600-16561800	Enhancers	NHDF-Ad	bronchial
6	chr20:16559600-16562000	Enhancers	Duodenum Mucosa	Duodenum
7	chr20:16559600-16562000	Enhancers	Fetal Intestine Small	intestine
8	chr20:16559600-16562200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr20:16559800-16562000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr20:16559800-16562200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr20:16559800-16564600	Enhancers	Fetal Brain Male	brain
12	chr20:16559800-16567000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr20:16560000-16561200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr20:16560000-16561400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr20:16560000-16561600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr20:16560000-16561600	Enhancers	HMEC	breast
17	chr20:16560000-16561800	Enhancers	Osteobl	bone
18	chr20:16560000-16562000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr20:16560000-16562000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr20:16560000-16562000	Enhancers	Stomach Mucosa	stomach
21	chr20:16560000-16562200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr20:16560000-16562200	Enhancers	NHEK	skin
23	chr20:16560000-16562400	Enhancers	Placenta Amnion	Placenta Amnion
24	chr20:16560000-16562600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr20:16560200-16561200	Enhancers	ES-I3 Cell Line	embryonic stem cell
26	chr20:16560200-16561200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr20:16560200-16561200	Weak transcription	Right Atrium	heart
28	chr20:16560200-16561400	Enhancers	Muscle Satellite Cultured Cells	--
29	chr20:16560200-16561400	Enhancers	HSMMtube	muscle
30	chr20:16560200-16561600	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr20:16560200-16561600	Enhancers	Brain Germinal Matrix	brain
32	chr20:16560200-16561600	Enhancers	Duodenum Smooth Muscle	Duodenum
33	chr20:16560200-16561600	Enhancers	NHLF	lung
34	chr20:16560200-16562200	Enhancers	Fetal Lung	lung
35	chr20:16560400-16561200	Weak transcription	Small Intestine	intestine
36	chr20:16560400-16561600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr20:16560400-16561600	Enhancers	Hela-S3	cervix
38	chr20:16560600-16561200	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr20:16560600-16561200	Enhancers	HepG2	liver
40	chr20:16560600-16561400	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr20:16560600-16561400	Enhancers	A549	lung
42	chr20:16560600-16561600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr20:16560800-16561200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr20:16560800-16561600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr20:16560800-16561600	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr20:16560800-16561600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr20:16560800-16561600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr20:16560800-16561600	Enhancers	Adipose Nuclei	Adipose
49	chr20:16560800-16561600	Enhancers	Fetal Brain Female	brain
50	chr20:16560800-16561600	Enhancers	Fetal Stomach	stomach

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