Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1157013	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1174854	0.87[ASN][1000 genomes]
rs12539572	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1319554	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13245173	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1389273	0.90[ASN][1000 genomes]
rs1406757	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1406758	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1689294	0.90[ASN][1000 genomes]
rs1689295	0.90[ASN][1000 genomes]
rs1689300	0.90[ASN][1000 genomes]
rs1689301	0.89[ASN][1000 genomes]
rs1689310	0.87[ASN][1000 genomes]
rs1689311	0.87[ASN][1000 genomes]
rs1731313	0.87[ASN][1000 genomes]
rs1731314	0.88[ASN][1000 genomes]
rs1731315	0.88[ASN][1000 genomes]
rs1731321	0.90[ASN][1000 genomes]
rs2452792	0.88[ASN][1000 genomes]
rs7806786	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888026	chr7:52588348-53013671	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv888027	chr7:52588348-53190508	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1017676	chr7:52932139-53350524	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv831001	chr7:53003534-53152783	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:53007600-53009000	Enhancers	Fetal Muscle Leg	muscle
2	chr7:53007800-53009000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:53008400-53009000	Enhancers	Placenta	Placenta
4	chr7:53008600-53009200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr7:53008800-53010400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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