Variant report

Variant	rs7456867
Chromosome Location	chr7:50671481-50671482
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:50671344..50672957-chr7:50675090..50677359,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs2329484	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4947710	0.93[AFR][1000 genomes]
rs7780697	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016665	chr7:50452552-51404524	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1015758	chr7:50565404-50768153	Flanking Active TSS Genic enhancers Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	nsv1023228	chr7:50573214-50777634	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv1032882	chr7:50611138-50775257	Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv538834	chr7:50611138-50775257	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1031138	chr7:50651793-50814881	Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv1021753	chr7:50671350-50694457	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:108 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:50652000-50671800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr7:50652400-50687400	Weak transcription	Right Atrium	heart
3	chr7:50653200-50672400	Weak transcription	NHEK	skin
4	chr7:50654000-50680000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:50657200-50678000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr7:50658200-50675800	Strong transcription	HSMMtube	muscle
7	chr7:50658200-50682000	Weak transcription	Colonic Mucosa	Colon
8	chr7:50658200-50690400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr7:50658800-50673200	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:50658800-50686800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr7:50658800-50690000	Weak transcription	Fetal Kidney	kidney
12	chr7:50659000-50678600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:50659200-50672200	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr7:50659200-50677000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr7:50659200-50680000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr7:50659200-50683600	Weak transcription	Small Intestine	intestine
17	chr7:50659400-50675800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr7:50659600-50675600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr7:50659800-50679000	Weak transcription	NHDF-Ad	bronchial
20	chr7:50659800-50687800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:50659800-50697200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:50660000-50675600	Weak transcription	Primary T helper cells PMA-I stimulated	--
23	chr7:50660400-50673400	Weak transcription	Fetal Brain Female	brain
24	chr7:50660600-50688000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr7:50660800-50673400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr7:50661000-50673600	Weak transcription	Esophagus	oesophagus
27	chr7:50663800-50674400	Strong transcription	Left Ventricle	heart
28	chr7:50663800-50675800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr7:50664600-50675800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr7:50664800-50674400	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr7:50664800-50675800	Strong transcription	Adipose Nuclei	Adipose
32	chr7:50665000-50688000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr7:50666000-50675600	Strong transcription	Stomach Smooth Muscle	stomach
34	chr7:50666600-50671600	Weak transcription	Colon Smooth Muscle	Colon
35	chr7:50666600-50672600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr7:50666600-50677600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr7:50666600-50680400	Weak transcription	Brain Angular Gyrus	brain
38	chr7:50666800-50671800	Weak transcription	Placenta	Placenta
39	chr7:50666800-50673800	Weak transcription	Monocytes-CD14+_RO01746	blood
40	chr7:50667000-50686200	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr7:50667200-50682000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr7:50667600-50681600	Weak transcription	HepG2	liver
43	chr7:50668000-50689000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr7:50668600-50675800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr7:50668600-50676200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr7:50668800-50671600	Strong transcription	HUVEC	blood vessel
47	chr7:50669000-50677200	Weak transcription	Stomach Mucosa	stomach
48	chr7:50669600-50672400	Strong transcription	HSMM	muscle
49	chr7:50669600-50674400	Strong transcription	Psoas Muscle	Psoas
50	chr7:50669600-50676000	Strong transcription	Osteobl	bone

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