Variant report

Variant	rs745707
Chromosome Location	chr3:160652672-160652673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10936215	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12690576	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13098529	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1374787	0.84[EUR][1000 genomes]
rs1447626	0.87[EUR][1000 genomes]
rs1868108	0.80[EUR][1000 genomes]
rs1868109	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2376476	0.81[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2376477	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4679663	0.82[EUR][1000 genomes]
rs4679928	0.84[EUR][1000 genomes]
rs733948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7611005	0.83[EUR][1000 genomes]
rs7626904	0.83[EUR][1000 genomes]
rs7626985	0.84[EUR][1000 genomes]
rs7640874	0.84[EUR][1000 genomes]
rs956447	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9881807	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs745707	B3GALNT1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160644800-160654400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:160648000-160653200	Weak transcription	Adipose Nuclei	Adipose
3	chr3:160651000-160653400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr3:160652400-160653800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links