Variant report

Variant	rs74612574
Chromosome Location	chr15:75204565-75204566
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75204307..75205904-chr15:75218795..75220535,2	MCF-7	breast:
2	chr15:75204201..75207198-chr15:75248620..75251894,3	MCF-7	breast:
3	chr12:120729160..120731044-chr15:75203299..75205954,2	MCF-7	breast:
4	chr15:75202900..75206033-chr15:75227299..75230499,5	K562	blood:
5	chr15:75135584..75137401-chr15:75203123..75205783,2	K562	blood:
6	chr15:75196237..75205947-chr15:75227299..75233104,18	K562	blood:
7	chr15:75197065..75200816-chr15:75202380..75207504,10	K562	blood:

Variant related genes	Relation type
ENSG00000198794	Chromatin interaction
ENSG00000202538	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000200795	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv3312325	chr15:75203053-75210647	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
3	esv3312326	chr15:75203067-75210644	Strong transcription Weak transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75199600-75229400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr15:75199800-75209400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:75199800-75219600	Weak transcription	Aorta	Aorta
4	chr15:75200000-75205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:75200000-75205400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr15:75200000-75205400	Weak transcription	HSMMtube	muscle
7	chr15:75200000-75205600	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr15:75200000-75205600	Weak transcription	Primary B cells from cord blood	blood
9	chr15:75200000-75206400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:75200000-75207000	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr15:75200000-75207000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:75200000-75207000	Weak transcription	Esophagus	oesophagus
13	chr15:75200000-75207200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr15:75200000-75207200	Weak transcription	Gastric	stomach
15	chr15:75200000-75209600	Weak transcription	Psoas Muscle	Psoas
16	chr15:75200000-75209800	Weak transcription	Ovary	ovary
17	chr15:75200000-75209800	Weak transcription	Small Intestine	intestine
18	chr15:75200000-75211000	Weak transcription	Fetal Kidney	kidney
19	chr15:75200000-75211600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:75200000-75221000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr15:75200000-75224000	Weak transcription	Stomach Mucosa	stomach
22	chr15:75200200-75204800	Weak transcription	HSMM	muscle
23	chr15:75200200-75205600	Weak transcription	Brain Anterior Caudate	brain
24	chr15:75200200-75206400	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:75200200-75206400	Weak transcription	Brain Angular Gyrus	brain
26	chr15:75200200-75207000	Weak transcription	Colonic Mucosa	Colon
27	chr15:75200200-75207000	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:75200200-75207000	Weak transcription	Spleen	Spleen
29	chr15:75200200-75207000	Weak transcription	HUVEC	blood vessel
30	chr15:75200200-75207200	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr15:75200200-75207400	Weak transcription	Colon Smooth Muscle	Colon
32	chr15:75200200-75207600	Weak transcription	Fetal Lung	lung
33	chr15:75200200-75208800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr15:75200200-75209800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
35	chr15:75200200-75209800	Weak transcription	HepG2	liver
36	chr15:75200200-75209800	Weak transcription	HMEC	breast
37	chr15:75200200-75210800	Weak transcription	Fetal Brain Male	brain
38	chr15:75200200-75211000	Weak transcription	NHDF-Ad	bronchial
39	chr15:75200400-75205600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:75200400-75207000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr15:75200400-75207000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:75200400-75207000	Weak transcription	Dnd41	blood
43	chr15:75200400-75207400	Weak transcription	Primary T helper cells PMA-I stimulated	--
44	chr15:75200400-75207600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr15:75200400-75211000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr15:75200400-75211400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
47	chr15:75200400-75211400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr15:75200400-75221200	Weak transcription	Fetal Heart	heart
49	chr15:75201000-75213000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr15:75201000-75224600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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