Variant report

Variant	rs7462810
Chromosome Location	chr8:95720033-95720034
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:95719585..95721311-chr8:95721435..95724317,3	MCF-7	breast:
2	chr8:95718701..95721184-chr8:95730414..95732938,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA1429-6	chr8:95718689-95720871	refGeneNc_4351_NR_034034

Variant related genes	Relation type
ENSG00000156162	Chromatin interaction
ENSG00000253429	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13279344	0.82[AMR][1000 genomes]
rs17644352	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17645441	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17717009	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17717431	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4596617	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55663086	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56006709	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56193547	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7010737	0.86[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1017301	chr8:95273503-96248352	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv539680	chr8:95273503-96248352	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv532338	chr8:95296118-95971825	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:95690600-95722600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:95702400-95720400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
3	chr8:95702600-95720200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr8:95702800-95720200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
5	chr8:95706200-95720600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:95710800-95722200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr8:95712600-95728800	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr8:95712800-95720200	Weak transcription	Esophagus	oesophagus
9	chr8:95713000-95730600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr8:95714400-95731400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr8:95715200-95720800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:95716200-95730800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr8:95717200-95730800	Weak transcription	Fetal Intestine Small	intestine
14	chr8:95718400-95721200	Weak transcription	Pancreas	Pancrea
15	chr8:95718400-95731400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:95718600-95726200	Weak transcription	NHEK	skin
17	chr8:95718800-95723600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr8:95718800-95731200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr8:95719200-95722800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:95719200-95730800	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr8:95719400-95721800	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr8:95719400-95724200	Weak transcription	H1 Cell Line	embryonic stem cell
23	chr8:95719400-95730400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr8:95719400-95730800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
25	chr8:95719400-95731000	Weak transcription	Placenta	Placenta
26	chr8:95719600-95721800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:95719600-95724000	Weak transcription	Colonic Mucosa	Colon
28	chr8:95719600-95726200	Weak transcription	HMEC	breast
29	chr8:95719600-95731000	Weak transcription	Duodenum Mucosa	Duodenum
30	chr8:95719800-95726400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr8:95719800-95727000	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr8:95719800-95727000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr8:95719800-95730400	Weak transcription	HUES64 Cell Line	embryonic stem cell
34	chr8:95720000-95731000	Weak transcription	Fetal Intestine Large	intestine

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