Variant report

Variant	rs746320
Chromosome Location	chr1:45314977-45314978
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:45312610..45316210-chr1:45318036..45321693,5	K562	blood:
2	chr1:45312444..45315409-chr1:46048277..46051211,2	K562	blood:
3	chr1:45309196..45310830-chr1:45314406..45315963,2	K562	blood:
4	chr1:45298794..45301202-chr1:45313186..45315040,2	MCF-7	breast:
5	chr1:45284215..45286612-chr1:45313284..45315465,2	MCF-7	breast:
6	chr1:45312859..45315409-chr1:46048277..46051184,2	K562	blood:
7	chr1:45311178..45313247-chr1:45314183..45316147,2	MCF-7	breast:
8	chr1:45306094..45308477-chr1:45314879..45317391,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000226499	Chromatin interaction
ENSG00000202444	Chromatin interaction
ENSG00000132780	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10158188	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11211037	0.96[CEU][hapmap]
rs11211044	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11211046	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11211047	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11573543	0.91[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs11577974	0.85[CEU][hapmap]
rs11584031	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs12059964	0.87[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12094007	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12118515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12120470	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12144803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1226572	0.83[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs12408818	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12568279	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2273940	0.93[EUR][1000 genomes]
rs263956	0.83[ASN][1000 genomes]
rs263962	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs263965	0.96[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs263966	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs263975	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs263977	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs263980	0.82[ASN][1000 genomes]
rs263987	0.84[ASN][1000 genomes]
rs263990	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs264005	0.82[ASN][1000 genomes]
rs264009	0.82[ASN][1000 genomes]
rs264011	0.82[CHB][hapmap];0.86[JPT][hapmap]
rs264014	0.87[JPT][hapmap]
rs2983715	0.82[JPT][hapmap]
rs3121173	0.82[ASN][1000 genomes]
rs36107413	0.82[ASN][1000 genomes]
rs3795720	1.00[CEU][hapmap];0.95[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs438493	0.82[ASN][1000 genomes]
rs452989	0.82[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs6429548	0.86[CHB][hapmap];0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs6688465	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6696675	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698951	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7514741	0.92[EUR][1000 genomes]
rs7524446	0.80[JPT][hapmap]
rs7525308	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs7526786	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7545808	0.93[EUR][1000 genomes]
rs7554177	0.96[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs932691	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9429058	0.82[ASN][1000 genomes]
rs9645347	0.93[EUR][1000 genomes]
rs9988451	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533037	chr1:44361728-45333408	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
2	nsv1014894	chr1:45139123-45397943	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	414 gene(s)	inside rSNPs	diseases
3	nsv529677	chr1:45179509-45748571	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	424 gene(s)	inside rSNPs	diseases
4	nsv1002026	chr1:45187594-45758048	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	386 gene(s)	inside rSNPs	diseases
5	nsv870815	chr1:45233638-45318752	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	127 gene(s)	inside rSNPs	diseases
6	nsv546146	chr1:45258141-45318752	Genic enhancers Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	109 gene(s)	inside rSNPs	diseases
7	nsv915644	chr1:45282802-45696079	Enhancers Genic enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:45308800-45345400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr1:45309000-45315800	Weak transcription	Lung	lung
3	chr1:45309000-45324600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr1:45309000-45332600	Weak transcription	Spleen	Spleen
5	chr1:45309000-45335600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:45309200-45316000	Weak transcription	Pancreas	Pancrea
7	chr1:45309200-45316200	Weak transcription	Gastric	stomach
8	chr1:45309200-45323200	Weak transcription	HSMM	muscle
9	chr1:45309200-45336800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr1:45309200-45337800	Weak transcription	Psoas Muscle	Psoas
11	chr1:45309200-45343000	Weak transcription	Esophagus	oesophagus
12	chr1:45309200-45345200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:45309200-45360600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr1:45309400-45315000	Weak transcription	Placenta	Placenta
15	chr1:45309400-45315200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr1:45309400-45315400	Weak transcription	Primary T helper cells fromperipheralblood	blood
17	chr1:45309400-45315400	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr1:45309400-45315400	Weak transcription	Osteobl	bone
19	chr1:45309400-45315600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:45309400-45315600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr1:45309400-45315600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr1:45309400-45315600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr1:45309400-45315600	Weak transcription	K562	blood
24	chr1:45309400-45315800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr1:45309400-45315800	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr1:45309400-45315800	Weak transcription	Liver	Liver
27	chr1:45309400-45315800	Weak transcription	Fetal Intestine Large	intestine
28	chr1:45309400-45315800	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr1:45309400-45315800	Weak transcription	Skeletal Muscle Female	skeletal muscle
30	chr1:45309400-45316000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:45309400-45316200	Weak transcription	Dnd41	blood
32	chr1:45309400-45316400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr1:45309400-45317200	Weak transcription	Primary B cells from peripheral blood	blood
34	chr1:45309400-45320600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr1:45309400-45320800	Weak transcription	H9 Cell Line	embryonic stem cell
36	chr1:45309400-45321600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:45309400-45321600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr1:45309400-45322400	Weak transcription	Primary B cells from cord blood	blood
39	chr1:45309400-45323200	Weak transcription	HSMMtube	muscle
40	chr1:45309400-45326400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr1:45309400-45338200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr1:45309400-45339600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr1:45309400-45340000	Weak transcription	NHLF	lung
44	chr1:45309400-45340400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr1:45309400-45343000	Weak transcription	Colonic Mucosa	Colon
46	chr1:45309400-45350400	Weak transcription	HUVEC	blood vessel
47	chr1:45309600-45315200	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr1:45309600-45315200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr1:45309600-45315400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:45309600-45315600	Weak transcription	Stomach Smooth Muscle	stomach

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