Variant report

Variant	rs7464057
Chromosome Location	chr8:125885692-125885693
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:125879365..125882872-chr8:125883741..125886693,4	MCF-7	breast:
2	chr8:125885238..125886912-chr8:125890382..125892259,2	MCF-7	breast:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10110021	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10956220	0.85[CEU][hapmap]
rs11774426	0.85[CEU][hapmap];0.93[TSI][hapmap]
rs11784930	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs11987239	0.89[CEU][hapmap];0.91[EUR][1000 genomes]
rs11988572	0.83[EUR][1000 genomes]
rs11990757	0.96[CEU][hapmap];0.92[CHB][hapmap];0.90[JPT][hapmap]
rs12542397	0.85[CEU][hapmap];0.81[JPT][hapmap]
rs12547431	0.85[CEU][hapmap];0.93[TSI][hapmap]
rs12549299	0.91[CEU][hapmap]
rs13272895	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs28513649	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4870928	0.80[CEU][hapmap]
rs4871560	0.89[CEU][hapmap]
rs4871562	0.89[CEU][hapmap];0.93[TSI][hapmap];0.91[EUR][1000 genomes]
rs4871564	0.91[EUR][1000 genomes]
rs4871565	0.91[EUR][1000 genomes]
rs62529062	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62529063	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62530623	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6470289	0.85[CEU][hapmap];0.93[TSI][hapmap]
rs6470290	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap]
rs6470296	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs6470313	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs6985287	0.91[EUR][1000 genomes]
rs6987095	0.89[CEU][hapmap];0.82[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6992468	0.85[CEU][hapmap]
rs7461829	0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7819144	0.90[EUR][1000 genomes]
rs7835994	0.85[CEU][hapmap];0.93[TSI][hapmap]
rs7845282	0.91[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[GIH][hapmap];0.95[MEX][hapmap];0.94[MKK][hapmap];0.96[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9694326	0.89[CEU][hapmap];0.82[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891434	chr8:125630655-126324432	Strong transcription Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv1030803	chr8:125868684-125969635	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv1024405	chr8:125868684-125971035	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv1020502	chr8:125868684-125972572	Active TSS Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:125882600-125886400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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